| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_0489 |
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| Symbol | |
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| ID | 6184544 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010531 |
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| Strand | + |
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| Start bp | 434592 |
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| End bp | 435854 |
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| Gene Length | 1263 bp |
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| Protein Length | 420 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 641671172 |
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| Product | lipoprotein releasing system, transmembrane protein, LolC/E family |
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| Protein accession | YP_001797369 |
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| Protein GI | 171463256 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG4591] ABC-type transport system, involved in lipoprotein release, permease component |
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| TIGRFAM ID | [TIGR02212] lipoprotein releasing system, transmembrane protein, LolC/E family |
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Plasmid Coverage information |
| Num covering plasmid clones | 32 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 78 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTGAGAC TTCCTATTGA GCTAGAAATT GGCCTGCGCT ACACCCGATC TAAGCGTCGC
AAGACGGTAG GGAAGCGTGA CGGCTTCCTG TCCTTTATCT CAGGAATATC TACCGCTGGT
ATCGCTTTGG GGGTTGCATC GCTGATCGTA GTTATTTCGG TGATGAATGG CTTTCAGAAA
GAAGTACGGG ATCGCATGTT GTCGGTTTTA TCTCATGTGG AGATTACCGC GCCTGATGGG
TTGGCAAATT GGGAACCTCT GGCGCTTAAA GTGGCAGCAC AACCTCATGT AGTTGGTGTG
GCACCTATGG TGAGCTCGCA AGGATTGCTT AGTCGTGAGA GTATGATGCG TGGTGTAGCG
ATTCGTGGCA TCTTGCCAAG TGAAGAAAGT AAGGTGTCTG ATTTACCAAA ACAATTTGTT
GCGGGCAGCA TTGATGATTT AAAGCCGGGA AGTTTTGGGG TTGCCTTGGG CGCACAACTT
GCAGCGATTG TTGGTGCGCA CTTGGGCGAT CGTATTAATT TGATTGTTCC TGAAAGTGAT
TTAACGCCAG CAGGCGCTAT GCCTCGTATG CGCATACTTC AAGTAGTGGG TATTGTGGAT
AGTGGACATT ATGAATACGA CAGCTCCTTA GCTATCATGC ACTGGAAAGA CGCTGCCGCC
TTGTTGCGCC TCCATGACCC ATCTGGCTTA CGTGTCAAAG TAGATGATAT GCAGCGCGCC
CCGCAAGTCG CCAATGAATT GGCGGCTATT GTGCCTCAAG CTCTCTGGGT TATCGACTGG
TCAAAATCGA ATCGCAACTG GTTTGCTGCA GTTCAGACCG AAAAGAAAAT GATGTTCATC
ATCCTAACGT TGATTATTGC AGTAGCAGCT TTTAATTTGG TATCCACCTT AGTGATGACT
GTGAATGAGA AACAGGCTGA TATTGCAATT TTAAGAACGA TGGGTGCAAG CCCTGGCTTA
ATCCAGAGAA TATTTTTAAT TCAAGGTTTA TCGATTGGTC TTTTGGGATC TTTAGCTGGA
GTAGGCTTAG GCTTACTAAT TGCACTCAAT ATTGATGCCA TTGTTCCAGT GATTGAAGTA
ATCTTCCGTG TACAGTTTTT GCCGCATGAA GTGTATTTCA TCAGTGAGCT ACCTTCCGAT
GTTAGAGCAA GTGATGTGCT TACAGTTGGC TTGATGGCCT TTGGTCTATC TGTACTGGCG
ACACTGTATC CAAGTCGTCG AGCCGCTAAG GTTCAACCTG CAGAGGCTCT ACGTTATGAA
TAA
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| Protein sequence | MLRLPIELEI GLRYTRSKRR KTVGKRDGFL SFISGISTAG IALGVASLIV VISVMNGFQK
EVRDRMLSVL SHVEITAPDG LANWEPLALK VAAQPHVVGV APMVSSQGLL SRESMMRGVA
IRGILPSEES KVSDLPKQFV AGSIDDLKPG SFGVALGAQL AAIVGAHLGD RINLIVPESD
LTPAGAMPRM RILQVVGIVD SGHYEYDSSL AIMHWKDAAA LLRLHDPSGL RVKVDDMQRA
PQVANELAAI VPQALWVIDW SKSNRNWFAA VQTEKKMMFI ILTLIIAVAA FNLVSTLVMT
VNEKQADIAI LRTMGASPGL IQRIFLIQGL SIGLLGSLAG VGLGLLIALN IDAIVPVIEV
IFRVQFLPHE VYFISELPSD VRASDVLTVG LMAFGLSVLA TLYPSRRAAK VQPAEALRYE
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