| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_0485 |
|---|
| Symbol | lysS |
|---|
| ID | 6184526 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010531 |
|---|
| Strand | - |
|---|
| Start bp | 429109 |
|---|
| End bp | 430653 |
|---|
| Gene Length | 1545 bp |
|---|
| Protein Length | 514 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 641671168 |
|---|
| Product | lysyl-tRNA synthetase |
|---|
| Protein accession | YP_001797365 |
|---|
| Protein GI | 171463252 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1190] Lysyl-tRNA synthetase (class II) |
|---|
| TIGRFAM ID | [TIGR00499] lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.481097 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 80 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACGACA AATCGAATTT ACCTCCAGTT ACCGAAGCAA TTGATGAGAA TCACATCATT
GCGGAGCGCC GTGAAAAGCT AGCCAAGTTA CGCAAAGGTG GGGTTGCATT TCCCAATGAC
TTTGCCCCTA CACACTTGGC GGCAGATCTG CATTCGTACT ATGACAGCCT CACTAAAAAA
GAATTGGCTG CGAAGAAAAT TCATGTCAAG GTTGCTGGAC GCATGGTTCT TAAACGTGTG
ATGGGTAAAA CAAGTTTCGC AACCATTCAA GATCGCAGCG GTCAGATTCA GTTCTACATC
AATGATGAGT TGAGTGGCGC CGATGTCCAT GGCGCCTTCA AACATTGGGA TATGGGTGAC
TTTATCTCCA CTGAAGGCAA TCTCTTTAAA ACCAATAAAG GCGAGCTATC AGTGGAGTGC
AGCAATTTAC GCCTCCTCAG CAAATCATTG CGTCCATTGC CAGATAAGTT CCACGGTCTC
TCAGATCTAG AGACTAAATA TCGCCAACGC TATGTAGACT TGATTGTTAA TCCAGAAAGT
CGTAGTACAT TTAAAGCGCG CAGTAACGCT ATCGCTTCTT TACGTCGCCA TATGCTAGAT
GCCGACTTTA TGGAAGTAGA GACCCCTATG CTCCACCCTA TTCCCGGTGG TGCAGCAGCA
AAGCCTTTTA TTACCCACCA TAATGCACTC GATATGCAAA TGTTTTTGCG TATTGCACCT
GAGCTTTATC TCAAACGTTT AGTGGTTGGT GGCTTTGAAC GTGTTTTTGA AATTAACCAC
AACTTCCGTA ACGAAGGCGT AAGTCCACGT CACAACCCAG AATTCACCAT GATGGAATTC
TATGCAGCTT ACACAGATTA CCGCTGGCTC ATGGACTTCA CTGAAGGATT AATTCGCGCT
GCCGCAATTG ATGCACAAGG CACTGCTGTA TTGACCCATC AAGGTCGTGA GCTTGATCTG
AGCAAGCCGT TCCAACGCCT CACCATTACT GAAGCCATCC TGAAGTACTG CGGTCAATCA
GGCAAGAGCT ATGAAGCAGC CCAGCTTGAA GACGCCAACT TCATTCGCGT TGAATTGAAA
AAAGGTGGTG AGAATCCAGA TGCTCCTACG CTCAAGAATG CCGGCATTGG CGCACTCCAG
CTAGCCCTCT TTGAATTGGT TGCAGAAGAG CACCTCTGGG AGCCAACCTA CATCATTGAT
TACCCAATTG AAGTAAGCCC ACTCGCCAGA GAATCGGATA CTCGTCCAGG CATTACTGAG
CGCTTTGAGC TGTTTATTAC CGGTCGCGAA ATTGCCAATG GCTTCTCCGA ATTAAATGAC
GCTGAAGATC AAGCCAACCG CTTCCGCAAG CAAGTTGAGC AAAAAGAAGC GGGCGACGAA
GAGGCTATGT ATTTTGATCA TGACTTCATT CGCGCCCTCG AGTACGGCAT GCCTCCAACT
GGCGGTTGCG GTATTGGTAT CGATCGTTTA ATAATGCTAC TTACCGATGC TCCAAACATT
CGTGATGTGA TCCTCTTTCC GCATTTGCGT CGCGAAGAAG ATTAA
|
|---|
| Protein sequence | MNDKSNLPPV TEAIDENHII AERREKLAKL RKGGVAFPND FAPTHLAADL HSYYDSLTKK
ELAAKKIHVK VAGRMVLKRV MGKTSFATIQ DRSGQIQFYI NDELSGADVH GAFKHWDMGD
FISTEGNLFK TNKGELSVEC SNLRLLSKSL RPLPDKFHGL SDLETKYRQR YVDLIVNPES
RSTFKARSNA IASLRRHMLD ADFMEVETPM LHPIPGGAAA KPFITHHNAL DMQMFLRIAP
ELYLKRLVVG GFERVFEINH NFRNEGVSPR HNPEFTMMEF YAAYTDYRWL MDFTEGLIRA
AAIDAQGTAV LTHQGRELDL SKPFQRLTIT EAILKYCGQS GKSYEAAQLE DANFIRVELK
KGGENPDAPT LKNAGIGALQ LALFELVAEE HLWEPTYIID YPIEVSPLAR ESDTRPGITE
RFELFITGRE IANGFSELND AEDQANRFRK QVEQKEAGDE EAMYFDHDFI RALEYGMPPT
GGCGIGIDRL IMLLTDAPNI RDVILFPHLR REED
|
|---|
| |