| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_0467 |
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| Symbol | |
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| ID | 6184242 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010531 |
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| Strand | + |
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| Start bp | 415171 |
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| End bp | 417327 |
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| Gene Length | 2157 bp |
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| Protein Length | 718 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 641671151 |
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| Product | excinuclease ABC subunit B |
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| Protein accession | YP_001797348 |
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| Protein GI | 171463235 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0556] Helicase subunit of the DNA excision repair complex |
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| TIGRFAM ID | [TIGR00631] excinuclease ABC, B subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.00244529 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 76 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATAGCCG AAATGCCCTC TAAGTTGCCC AAAATTGGTC CAAATTCTGA AGTAAAAGTG
GATAAGAAAA GCCCGGCAGC AGATCCTTTG GGCGAAGCTG GCCACGACTT GGATCCAGCC
AAGTTTATTA CCTTCCCGGA CTCCCTTTAT CAGCTTTACC AGCCGTTTGC CCCTGCTGGG
GACCAGCCCC AGGCTATTGA TGCCTTGGTG GAGGGTATTG AGGATGGATT GACCTTTCAG
ACGCTTTTAG GGGTTACTGG GTCGGGAAAG ACCTTCACGA TGGCCAATGT GATCGCCAGA
ACCGGTCGTC CAGCCATCAT TTTTGCCCCT AATAAGACCT TGGCAGCCCA ACTTTATAGC
GAATTTAGGG AGTTTTTCCC CAAAAATGCT GTTGAGTACT TCGTTAGCTA CTACGACTAT
TATCAGCCAG AGGCCTACGT TCCTCAGCGC GACCTGTTTA TTGAGAAAGA TTCCTCGATT
AATGAACACA TCGAGCAGAT GCGCTTATCG GCAACCAAGA GTCTTTTAGA GCGTCGCGAT
GTGGTTATTG TTGCCACCGT TTCTGCAATT TACGGCATTG GTAATCCTGG CGACTATCAC
AGTATGGTGA TGACATTGCG TCCTGGTGAC AAGATGAGCC AGCGTGATAT TTTGATGCGT
CTCATAGCAA TGCAATATGA CCGCAATGAA ACGGATTTCA AACGTGGCGT GTTTAGAGTG
CGCGGTGACA CGATTGATAT TTTCCCTGCT GAGCATAACG AGCTAGCGGT GCGAGTTGAA
TTGTTTGATG ATGTTATAGA GAGTTTGCAA TTCTTTGATC CGCTCACTGG AAAAATTCGT
CAGAAGATCC CGCAGTTTAC AGTTTACCCA AGTTCACATT ACGTAACGCC ACGCGATACG
GTTTTGAAAG CAATTGAAAC CATCAAAACA GAGTTGCGTA CTCGCTTAGA TGAGTTTGTT
AAAGATGGCA AGTTGGTCGA AGCACAGCGT CTTGAGCAAC GCACCCGTTT TGATCTAGAG
ATGCTTAATG AATTAGGTTT CTGCAAAGGC ATTGAAAACT ACTCGCGACA CCTATCTGGT
GCCGCTCCTG GAGAGGCTCC GCCTACGTTA GTGGACTATC TCCCTAATGA TGCTGTGATG
TTTCTCGATG AGAGTCACGT CTTAATTGGA CAGCTCAATG CGATGTATAA TGGTGATAAA
TCACGTAAAC ATACTTTGGT AGAGTTTGGT TTCCGCTTGC CTTCAGCGAT GGACAATCGT
CCGCTGAAAT TTGCGGAGTT TGAAACCAAG ATGCGTCAAA CTATTTTTGT TTCTGCAACA
CCAGCGGATT ATGAGGGCAC ACATCAAGGC CAGGTCGTAG AACAAGTTGC TAGACCAACT
GGATTGGTCG ATCCAGAAAT TGAAGTTTTG CCAGCAAGTA CACAAGTGGA TGATTTGTTA
GATCAAATTC ATGCGCGTGT CAAAGTGGGT GAACGCGTAT TGGTGACTGT GTTAACCAAA
CGGATGGCCG AGCAATTAAC TGACTATCTT TCCGATAACG GGGTGAAAGT GCGCTACGTG
CACTCTGATA TTGATACTGT TGAACGCGTA GAAATTTTGC GCGACTTGCG TTTGGGTGTC
TTCGATGTTT TAGTCGGGAT CAACTTATTG CGTGAAGGTC TAGATATTCC CGAGGTTTCA
CTAGTCGCCA TTCTGGATGC TGATAAAGAG GGTTTCTTGC GTTCTGAGCG CAGCCTGATT
CAGACCATTG GTCGTGCGGC GCGAAATGTT CGCGGTAAGG CCATTTTGTA TGCCGATCGA
ATCACGGACT CCATGAAACG CGCCATGGGG GAGACTGAAA GACGCCGCAC CAAGCAAATT
GCTTTCAATA AGTTGCATGG TATTGAGCCT AAAGGGGTTC AAAAGCGAAT TAAAGACATT
ATTGATGGTG TTTACGACGT CAAAGAGAAG CGTCAGGAGA TGCAGATAGA GCAGGAGCGG
GCTCGCTATG AGGATATGGG CGAGAAAGAC TTGGTGGCTG AAATTAAGCG CCTAGAGAAG
CAAATGAACG CTGAAGCCAA GAATCTGGAG TTTGAGAAGG CTGCCGGCAC ACGAGATAGG
CTTACCAAGG TTAAAGAAAT GGCGTTTGGG GCCAGGTCCA GAGATTCAAT CGGCTAA
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| Protein sequence | MIAEMPSKLP KIGPNSEVKV DKKSPAADPL GEAGHDLDPA KFITFPDSLY QLYQPFAPAG
DQPQAIDALV EGIEDGLTFQ TLLGVTGSGK TFTMANVIAR TGRPAIIFAP NKTLAAQLYS
EFREFFPKNA VEYFVSYYDY YQPEAYVPQR DLFIEKDSSI NEHIEQMRLS ATKSLLERRD
VVIVATVSAI YGIGNPGDYH SMVMTLRPGD KMSQRDILMR LIAMQYDRNE TDFKRGVFRV
RGDTIDIFPA EHNELAVRVE LFDDVIESLQ FFDPLTGKIR QKIPQFTVYP SSHYVTPRDT
VLKAIETIKT ELRTRLDEFV KDGKLVEAQR LEQRTRFDLE MLNELGFCKG IENYSRHLSG
AAPGEAPPTL VDYLPNDAVM FLDESHVLIG QLNAMYNGDK SRKHTLVEFG FRLPSAMDNR
PLKFAEFETK MRQTIFVSAT PADYEGTHQG QVVEQVARPT GLVDPEIEVL PASTQVDDLL
DQIHARVKVG ERVLVTVLTK RMAEQLTDYL SDNGVKVRYV HSDIDTVERV EILRDLRLGV
FDVLVGINLL REGLDIPEVS LVAILDADKE GFLRSERSLI QTIGRAARNV RGKAILYADR
ITDSMKRAMG ETERRRTKQI AFNKLHGIEP KGVQKRIKDI IDGVYDVKEK RQEMQIEQER
ARYEDMGEKD LVAEIKRLEK QMNAEAKNLE FEKAAGTRDR LTKVKEMAFG ARSRDSIG
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