| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_0453 |
|---|
| Symbol | |
|---|
| ID | 6184551 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010531 |
|---|
| Strand | + |
|---|
| Start bp | 402736 |
|---|
| End bp | 405339 |
|---|
| Gene Length | 2604 bp |
|---|
| Protein Length | 867 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 641671140 |
|---|
| Product | ATP-dependent chaperone ClpB |
|---|
| Protein accession | YP_001797337 |
|---|
| Protein GI | 171463224 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0542] ATPases with chaperone activity, ATP-binding subunit |
|---|
| TIGRFAM ID | [TIGR03346] ATP-dependent chaperone ClpB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.00000000117348 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 66 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGAATCG ATAAATTAAC AACTAAATTT CAAGAGGCTC TTAGCGAGGC TCAAAGCATC
GCTTTCGCTA AAGACAATCA ATATATCGAA CCGGCTCACG TCTTATTGGC AATGCTGCGT
GATTCCGATG GCGGCGCAAA GAGTTTGCTT ACTAGAGCTG GTATCAATGT TGCCGGCCTA
GAAAAAGGCG TGGAAAAGAT TATTGGCAAC CTTCCTGAGG TGCAGGGCGC TAGCGGTGAA
GTTCAAGTTG GCCGTGATTT GAGTAATTGG CTGAATTTGT GTGAAAAAGA GGCCAATAAG
CGGAATGACC AATTTATTGC TGGTGAGTTG TTCTTATTGG TAGTGGCGGA TGATAAGGGC
GAGCTTGGCA AAGTGGCCCA TGAGAATGGA TTAAATCGTA AATCGTTGGA GGCGGCTATT
GATTTAGTGC GCGGAGGAGA ATCAGTGAAT AGTGCGAATG CTGAAGGTCA ACGTGAGGCC
CTAAAGAAAT ATACAGTTGA TTTAACTGAA CGCGCTCGTA TGGGCAAGCT CGATCCGGTG
ATTGGTCGTG ATGACGAGAT TCGTCGCACC ATTCAGATCT TGCAGCGTCG CGGTAAAAAT
AACCCCGTGC TTATTGGAGA GTCAGGCGTA GGTAAGACTG CGATCGTAGA AGGATTGGCG
CAACGCATTG TGAACGGTGA AGTGCCTGAG ACTCTGAAGA ACAAGCGCGT CCTGGTCTTG
GATATGGCTT TGCTATTAGC TGGCGCTAAG TATCGCGGTG AGTTTGAAGA GCGTCTTAAG
GCAGTTCTTA GCGATGTCGC GAAGGATGAA GGTCAAACCA TTATATTTAT TGATGAAATT
CATACGATGG TTGGCGCTGG TAAGGGTGAT GGTGCAATGG ATGCTGGCAA TATGCTCAAG
CCCGCCTTGG CGCGCGGCGA ATTACATTGC ATCGGCGCCA CTACCCTGGA TGAATATCGC
AAGTACATTG AAAAAGATCC TGCTTTAGAG CGTCGCTTCC AAAAAGTAAT GATTGAAGAG
CCTAGTGTTG AGGCAACGAT TGCTATCTTG CGTGGTTTGC AGGAGCGCTA TGAACTGCAT
CACGGTATAG AGATCACCGA TCCCGCAATC GTGGCTGCTG CCGAGTTGTC GCATCGGTAC
ATTACAGATC GTTTCTTGCC AGATAAAGCC ATTGACCTCA TTGATGAGGC CGGCTCGCGC
ATTCGCATGG AAATCGATTC TAAGCCAGAG GTTATGGATA AGCTCGAGCG TCGTCTCATT
CAATTAAAAA TTGAGCGCGA AGCCGTTAAG AAGGAAAAAG ATGAGGCCTC TCAAAAGCGC
CTTGGCCTTA TTGAAGAGGA GATTAAGCGT CTTGGTGCCG AGTATGCCGA TTTAGAGGAA
ATCTGGAAGG CGGAGAAGGG CGCCGTTCTC GGTGCCGCCA ATCTGAAAGA AGAAATTGAA
AAGGTTAAGG CTGAGATCTC TAAGTTGCAA CGCGATGGCA AGTTGGAGCA AGTTGCTGAG
TTGCAATACG GTAAATTACC TGAGCTAGAG GCCAAGCTTA AATCTGCAGC TGCTGCGGAA
GCCAAGGGTG ATAAAGATGG TGTAGTAAAG AACAAATTGC TACGCACCCA AGTTGGCGTA
GAAGAAATCG CTGAAGTAGT TTCTCGTGCA ACTGGTATTC CGGTATCTAA GATGATGCAA
GGCGAGCGCG ATAAATTGCT GAAGATGGAA GAGCTCCTGC ATAAACGCGT GGTTGGTCAA
GAAGAGGCTA TTCGTGCGGT GTCTGATGCG ATTCGTCGTT CCCGTGCCGG CTTGGCTGAA
GAGAACCGTC CTTATGGATC ATTCTTGTTC CTAGGGCCTA CTGGTGTTGG TAAGACAAAG
TTATGCAAAG CATTAGCTGG CTTCTTATTT GATAGCGAAG ACCACCTCAT TCGTATTGAT
ATGAGTGAAT TTATGGAGAA GCACAGTGTT GCGCGTTTAA TTGGGGCGCC TCCGGGCTAC
GTTGGTTATG AAGAGGGTGG TTACCTGACT GAGCAAGTTC GTCGTCACCC ATATAGCGTG
ATCTTGTTTG ATGAAATCGA GAAGGCGCAT CCCGATGTCT TCAACGTTCT CTTGCAAGTG
TTAGATGATG GTCGTTTGAC TGATGGCCAA GGTCGTACGG TGGACTTTAA AAATACAGTT
ATCGTCATGA CGAGCAATAT TGGTTCGCAT TTAATTCAGT CCATGGCTGA CAAGAAGCAG
TCTGAAATTA AAGAAGCGGT ATTTGAAGAG TTGAAGAATC ATTTCCGTCC CGAGTTCTTG
AATCGGATTG ATGAAATCGT TGTGTTCCAT GGTTTGGACA AAGGTAACAT TGCCAACATC
GCGAAGATCC TACTCAAAAA CTTGTCGGAT CGCTTGGCAA AGGTTGATAT GCAGCTTGAG
GTCAGCGATG CGGCTCTGAA CAAGATTGCT GAAGTCGGTT TTGATCCAGT ATTTGGCGCA
AGACCGCTCA AGCGTGCGAT TCAGCAGCAT ATTGAGAACC CAGTTTCCAA GATGATTTTG
GAAGGAAAGT TCGGACCTAA GGATGTAGTG CCTGTGGATG TCGATAAGGT GGGTGACTTT
AGCTTTAGTC GTCAGGTTCA TTAA
|
|---|
| Protein sequence | MRIDKLTTKF QEALSEAQSI AFAKDNQYIE PAHVLLAMLR DSDGGAKSLL TRAGINVAGL
EKGVEKIIGN LPEVQGASGE VQVGRDLSNW LNLCEKEANK RNDQFIAGEL FLLVVADDKG
ELGKVAHENG LNRKSLEAAI DLVRGGESVN SANAEGQREA LKKYTVDLTE RARMGKLDPV
IGRDDEIRRT IQILQRRGKN NPVLIGESGV GKTAIVEGLA QRIVNGEVPE TLKNKRVLVL
DMALLLAGAK YRGEFEERLK AVLSDVAKDE GQTIIFIDEI HTMVGAGKGD GAMDAGNMLK
PALARGELHC IGATTLDEYR KYIEKDPALE RRFQKVMIEE PSVEATIAIL RGLQERYELH
HGIEITDPAI VAAAELSHRY ITDRFLPDKA IDLIDEAGSR IRMEIDSKPE VMDKLERRLI
QLKIEREAVK KEKDEASQKR LGLIEEEIKR LGAEYADLEE IWKAEKGAVL GAANLKEEIE
KVKAEISKLQ RDGKLEQVAE LQYGKLPELE AKLKSAAAAE AKGDKDGVVK NKLLRTQVGV
EEIAEVVSRA TGIPVSKMMQ GERDKLLKME ELLHKRVVGQ EEAIRAVSDA IRRSRAGLAE
ENRPYGSFLF LGPTGVGKTK LCKALAGFLF DSEDHLIRID MSEFMEKHSV ARLIGAPPGY
VGYEEGGYLT EQVRRHPYSV ILFDEIEKAH PDVFNVLLQV LDDGRLTDGQ GRTVDFKNTV
IVMTSNIGSH LIQSMADKKQ SEIKEAVFEE LKNHFRPEFL NRIDEIVVFH GLDKGNIANI
AKILLKNLSD RLAKVDMQLE VSDAALNKIA EVGFDPVFGA RPLKRAIQQH IENPVSKMIL
EGKFGPKDVV PVDVDKVGDF SFSRQVH
|
|---|
| |