| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_0440 |
|---|
| Symbol | |
|---|
| ID | 6182930 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010531 |
|---|
| Strand | - |
|---|
| Start bp | 391742 |
|---|
| End bp | 392908 |
|---|
| Gene Length | 1167 bp |
|---|
| Protein Length | 388 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 641671130 |
|---|
| Product | Glutamine--scyllo-inositol transaminase |
|---|
| Protein accession | YP_001797327 |
|---|
| Protein GI | 171463214 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0399] Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 38 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 64 |
|---|
| Fosmid unclonability p-value | 0.42883 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCAGACA CCAACACCCC ATTCATCCCC TTTACGCGTC CCAGCTTTAA TCAAGAAACG
ATTGATGCCG TTTCGGCAAT ATTGCGCTCT GGCTGGGTAA CTTCTGGCCC CAAGTTGGCA
GAGTTTGAAA AAACCTTAAG CAATTATTTT GGCGGACGCC CCGTACGCTG TTTTGCTAAC
GGCACTGCAA CGATGAAGAT TGCATTGCAG GTTGCGGGCA TTGGTGCTGG CGATGAAGTG
ATCACCACAC CAATCTCGTG GGTTGCAACA TCTAATGTGA TTTTGAGTGT TGGTGCAAAA
CCAGTGTTTG TTGATATCGA TCCGATAACA CGCAATATTG ACCTCACTAA AGTATCGGCC
GCGATGACAT CTAAGACTCG TGCAATCATG CCGGTCTACT TAGCAGGTCT ACCTATTGAT
ATGGATCAGC TCTATGCATT GGCCAAACAA CATAATCTGC GCGTGATCGA GGATGCGGCA
CAAGCTTTTG GGTCTCAATG GAGCGGTAAA AAGATCGGTA GTTTTGGTGA CTTAGTCAGC
TTTAGTTTTC AGGCCAATAA GAATCTCACT ACCATTGAGG GCGGTTGCCT TGTTTTGAAC
AATGAAGATG AGGCAAAGCT TGCCGAGAAA TTCCGTCTCC AAGGATTAAC TCGTCAGGGC
ATGGATGGCA TGGACGTAGA TGTATTGGGT GGTAAAGATA ATTTGACGGA TGTAAATGCG
GCAATTGGTC TTGAACAACT CAAGCAACTT CCTTTATACC AGGTGCGTCG GGCTGTGTTG
GCACGCCAGT ACTTCGATGT CATTCGTGCA GAATTGAAAT CCACTGGATT ACAAGATTTG
AAATTAGAGC TTCCAGTCGA AAACTTTACT GATAGCAACT GGCATATGTT TCAAATTGTT
TTGCCGCTTG AGCAATTGAA GGTTGACCGC GCCCAAGTTA TGACTGAACT AAAAGATCTT
GGCATTGGCA CTGGCATTCA TTACCCTGCA ATTACTGGAT TTACTCTTTA TAAAAACCAG
GGCTATAAAA CTTCGGATAC TCCGATTGCC GAGCGTATTG GCCGCTCCAT TCTAACTCTC
CCCTTATTTC CCGCAATGGC TGATAAAAAT ATTGGCCGCA TAGCTAGAGC GCTGGTCGAA
ATTTTGCAGA ATCACCGCAA AAACTAA
|
|---|
| Protein sequence | MPDTNTPFIP FTRPSFNQET IDAVSAILRS GWVTSGPKLA EFEKTLSNYF GGRPVRCFAN
GTATMKIALQ VAGIGAGDEV ITTPISWVAT SNVILSVGAK PVFVDIDPIT RNIDLTKVSA
AMTSKTRAIM PVYLAGLPID MDQLYALAKQ HNLRVIEDAA QAFGSQWSGK KIGSFGDLVS
FSFQANKNLT TIEGGCLVLN NEDEAKLAEK FRLQGLTRQG MDGMDVDVLG GKDNLTDVNA
AIGLEQLKQL PLYQVRRAVL ARQYFDVIRA ELKSTGLQDL KLELPVENFT DSNWHMFQIV
LPLEQLKVDR AQVMTELKDL GIGTGIHYPA ITGFTLYKNQ GYKTSDTPIA ERIGRSILTL
PLFPAMADKN IGRIARALVE ILQNHRKN
|
|---|
| |