| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_0396 |
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| Symbol | |
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| ID | 6183630 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010531 |
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| Strand | - |
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| Start bp | 350902 |
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| End bp | 353499 |
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| Gene Length | 2598 bp |
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| Protein Length | 865 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 641671089 |
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| Product | ribonuclease, Rne/Rng family |
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| Protein accession | YP_001797288 |
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| Protein GI | 171463175 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1530] Ribonucleases G and E |
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| TIGRFAM ID | [TIGR00757] ribonuclease, Rne/Rng family |
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Plasmid Coverage information |
| Num covering plasmid clones | 32 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 77 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACGCA TGTTGTTTAA TGCAACTCAA CAAGAAGAGT TGCGAGTTGC CATCGTTGAT
GGTCAAAAAC TCATTGATAT TGATATCGAA GCTGCCGGCC GTGAACAACG CAAAGGCAAT
ATCTACAAAG GTGTCATTAC CCATATTGAA CCCTCCCTTG AGGCCTGCTT TGTCAATTAC
GGCGAAGAAC GCCATGGCTT TTTGCCATTT AAGGAAGTTG CCCGCAGTTA CTTTAAAGAG
GGTATCGACG TCCGCAATGC CTCCATTAAG GACGCTTTGC GCGAAGGTCA AGAAATCATT
GTTCAAGTAG AAAAAGAGGA GCGTGGCCAA AAAGGCGCTG CTCTGACCTC CTTTATCTCT
TTGGCAGGCC GTTATTTGGT CTTAATGCCC AATAACCCAC GTGGAGGTGG CGTTTCTCGC
CGCATTGAGG GTGAAGACCG TCAAGAACTC CGCGAAGCCA TGTCTCAATT AGAGGTGCCA
GACGGCATAA GCATCATTGC TCGTACAGCT GGTATCGGTC GCGATGCTAC TGAATTGCAG
TGGGACTTAA GTTACCTCAT GCAATTGTGG AAGGCGATCG ATGAAGCAGC CAAAGGCAAT
TCTGCTCCCC TATTGATCTA CCTCGAATCT AACTTGGTGA TTCGCGCGAT TCGCGATTAC
TTCCAACCAG ATATCGGCGA GATCCTCATC GATACCGATG ACATCTATGA ACAAGCTGCC
GCATTTATGT CGGTTGTAAT GCCAGACAAC TTGCCACGCG TGAAGCGCTA TCAAGATGAC
GTGCCTTTGT TCTCCCGTTT CCAAATTGAG CATCAAATTG AAACCGCATG CTCACGTACT
GTGCCATTGC CTTCTGGCGG CGCAATTGTG ATCGACCACA CGGAAGCTTT GGTTTCTGTG
GACGTGAACT CAGCACGCGC AACACGCGGC TCTGATATTG AAGAAACTGC TACCCGCACC
AACTTAGAAG CTGCCGATGA AATCGCCCGT CAAGCACGTT TACGTGACTT GAGTGGATTG
ATCGTGATCG ACTTCATCGA CATGGAATCA AGCAAGGCCC AAAAAGATGT TGAGAATCGG
TTACGTGACG CTCTACGTCA TGACCGCGCC CGGGTTCAAA TGGGAAAAAT TTCTAAGTTT
GGCTTGATGG AAATGTCCCG TCAGCGCTTA CGCCCTGCAC TATCTGAAGG TAGCCATGTA
ACCTGCCCAC GTTGTAATGG CACCGGCCAT ATTCGCGATA CTGAATCTTC TGCATTGCAA
GTTTTGCGCA TCATTCAAGA AGAGGCAATG AAAGAAAACA CAGCAGCAAT TCATACTCAA
GTACCAGTAG AAGTGGCTGC GTTCCTCTTG AATGAAAAGC GTGCTGAAGT GATCAAGATT
GAGACTCGCT TCAAAGTGAA TGTCTTGATG GTTCCGAACA AGCATTTGGA AACACCGCAT
TACAAACTAG AGCGTTTGCG TCATGACGAT CCACGTCTTG ATGATCAAAA AGCAAGTTAT
GTGATGGCTG AAGAAGCTGC TCGTGAATTG GAAACAGATA CAACCGTCAG CAAGAAAGAT
GCTGACGTCA AAGTACGTCC AGAAGCTGCT GTAAAAGGCA TCACCCCAAC ACAACCAGCA
CCAATTAGCC AACCACGCCC TGCCCGCACT GAAAAAGCAA AAGCAGTAAG CACTACTGGT
GGTTTCTTTG AATTTATTAA GAGCCTCTTT GGCTCATCTC CAGCGGTTGA AGAAAAGCCA
GCACCAAGTA ATAATCGTGG CCGCAATCAA GGCCGTAATA GTGATCGCAA TCGTGGTCGT
AATCGTCACG GTGAACACAC TGAGCGTCCA GCAGCAGCTG CAGCCGAGGG TGCTCCAGCA
GAAGGTGGTA ACAATAATCG CGGTCGCAAC AACCGTAACG GCAATCGCAA TCAAAATGGT
CCTAAGCTAG AGCGCCAAGA AGGCAACCGC AATCAGGCAA ACGCTGCTGC AGTAACACCT
GCAACCGAAG CAACTCCTGG CAACGAAGCT ACTCCGGGCG CTGATGGTGA AGAGCGTCGT
GGCCGTGGTC GCGGTCAATG TGGCGAGCGC ACAGAAGGCA CAAACGATAC AGCTACTGCA
TCAGCTGCCG CCGTATCAGC AAGCCCCTTT GCAGGCCCTC CTGTAGGCAT GGCTGGCGCA
TCTGCGAGCA TGTCGATTCA GAACCTTGCT AATAGTTTTG GAAATACAAA ACCTGCTGCA
GAGAGACAAG AGCGCGCACC ACGTGCTCCA CGTCAATCGA ATCGTCCTGT GCAAAATGCC
GCTCCCGCTT CTGCTCCAGT TGCTCAAACT GCAGCACCGG TTGCCGTAGC TGCCGCAGCT
CAAGTAATCA GCAAGCCTGC ACCAGAACTT CCAAAGGTTG CCTTCCGGGC GCTTGAAGAA
ACTCCACTGC ATAGCGTTGT GCAATCCACA GGCATGATCT GGGTTGCTAC TGATTCATCA
AAGCACGCAG AAGCGCAAAG CCAAATTCAG GCAGAGCCTG CAGCACATAA CTTAGGTAGA
GCACCTAAAC CTGCCGCCCA ACTTCCTGAC GGTCCAATGG TTTTAGTTGA AACCGGCGGC
CAAGAAAAAA CGGTCTAA
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| Protein sequence | MKRMLFNATQ QEELRVAIVD GQKLIDIDIE AAGREQRKGN IYKGVITHIE PSLEACFVNY
GEERHGFLPF KEVARSYFKE GIDVRNASIK DALREGQEII VQVEKEERGQ KGAALTSFIS
LAGRYLVLMP NNPRGGGVSR RIEGEDRQEL REAMSQLEVP DGISIIARTA GIGRDATELQ
WDLSYLMQLW KAIDEAAKGN SAPLLIYLES NLVIRAIRDY FQPDIGEILI DTDDIYEQAA
AFMSVVMPDN LPRVKRYQDD VPLFSRFQIE HQIETACSRT VPLPSGGAIV IDHTEALVSV
DVNSARATRG SDIEETATRT NLEAADEIAR QARLRDLSGL IVIDFIDMES SKAQKDVENR
LRDALRHDRA RVQMGKISKF GLMEMSRQRL RPALSEGSHV TCPRCNGTGH IRDTESSALQ
VLRIIQEEAM KENTAAIHTQ VPVEVAAFLL NEKRAEVIKI ETRFKVNVLM VPNKHLETPH
YKLERLRHDD PRLDDQKASY VMAEEAAREL ETDTTVSKKD ADVKVRPEAA VKGITPTQPA
PISQPRPART EKAKAVSTTG GFFEFIKSLF GSSPAVEEKP APSNNRGRNQ GRNSDRNRGR
NRHGEHTERP AAAAAEGAPA EGGNNNRGRN NRNGNRNQNG PKLERQEGNR NQANAAAVTP
ATEATPGNEA TPGADGEERR GRGRGQCGER TEGTNDTATA SAAAVSASPF AGPPVGMAGA
SASMSIQNLA NSFGNTKPAA ERQERAPRAP RQSNRPVQNA APASAPVAQT AAPVAVAAAA
QVISKPAPEL PKVAFRALEE TPLHSVVQST GMIWVATDSS KHAEAQSQIQ AEPAAHNLGR
APKPAAQLPD GPMVLVETGG QEKTV
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