| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_0303 |
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| Symbol | tolB |
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| ID | 6184235 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010531 |
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| Strand | - |
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| Start bp | 272437 |
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| End bp | 273648 |
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| Gene Length | 1212 bp |
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| Protein Length | 403 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 641671011 |
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| Product | translocation protein TolB |
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| Protein accession | YP_001797210 |
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| Protein GI | 171463097 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0823] Periplasmic component of the Tol biopolymer transport system |
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| TIGRFAM ID | [TIGR02800] tol-pal system beta propeller repeat protein TolB |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 0.307961 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 86 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATATTG AAATCACTGG TGTAGGTCAG TCGCTCTATC CAATCGCAGT GATGCGTTTT
AAAGATGAAA ACAAACTACT AACCAGCGTT ACTGAAATTA TTCGTCAGGA TTTAGCTCGC
AGCGGATACT TTAAAAATAC TGAGAATGGT AATGCGGTCG AAAGTGATGA CGGCACTCCA
AACTACAAAT CTTGGGCGGC GCGTGGTGCC GATGCTTTGG TAGTAGGCTC TGTAGTACAA
ACCGGTGGCT CCCAATTTGA AATCCACTAC AAACTGTTTG ATATTCGTAA ATCTGTCAGT
CTAGGCGGCT TAAACCTCAA CTCTAGCGCC GATAACTTAC GTGCTGCAGC TCACAAAATT
GCTGACGACA TCATTTACAA GCTACTAGGT GAGCGTGGCG TATCTTCTAC TCGCCTCTCC
TATGTCATCA AGGATGGTAA GCGCTATCGC CTAGTGATCT CTGACGCTGA TGGTCAAAAT
ATTCGCAATG CAATGAATAG CAGTGAGCCA ATCATCTCCC CCTCTTGGTC ACCCGATGGC
AAGAAGGTAG CTTACGTTTC TTTTGAAGAT CGCAAGCCGG TGATTTACGT TCACGAACTG
GCTACTGGTC GTAGCATTTC GCTTTCCAAT CAAAAGGGAA ATAACAGCGC ACCAGCTTGG
TCACCTGATG GCAAAAAATT AGCAATCTCA TTATCTAAAG ATGGCAATAC CCAGATCTAT
GGCATCAACG CCGATGGCAC TGGTTTGCAT CGCTTAACTC GTGGCAACAC GATTGATACC
GAACCACAAT ATTCTGCGGA TGGTCGCTAC ATCTACTTCA CAAGCGATCG TGGTGGTAAT
CCGCAAATCT ATCGCATGAG TGCCGATGGC GAACAAGCTG AAGGTGTAAA ACGCGTCACC
TTTAAACAAG GTTTTGTGAC ATCACCTCGC ATCTCACCCG ATGGCAAGTA TTTGGCCTAT
ATCGCCAATA TTGGTGGTGC ATACCGCCTC TATATTCTGA ACTTAGCTAC CGGTGACGCT
CAAGCACTCA CCGATGGTAC TAGCGATGAA TCCCCCTCTT TTGCTGCAAA TGGTCGCTAT
GTTCTGTATT CCACCAAAGT TGGCGGTAAG CGCATTCTAG CTGCCGTTTC AGTAGACGGC
AACTCAAAGC GGGTGCTGAG TATCCCAGGG TCTGATGTTC GTCAGCCATC CTGGGGTCCT
TTCATGGACT AA
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| Protein sequence | MNIEITGVGQ SLYPIAVMRF KDENKLLTSV TEIIRQDLAR SGYFKNTENG NAVESDDGTP
NYKSWAARGA DALVVGSVVQ TGGSQFEIHY KLFDIRKSVS LGGLNLNSSA DNLRAAAHKI
ADDIIYKLLG ERGVSSTRLS YVIKDGKRYR LVISDADGQN IRNAMNSSEP IISPSWSPDG
KKVAYVSFED RKPVIYVHEL ATGRSISLSN QKGNNSAPAW SPDGKKLAIS LSKDGNTQIY
GINADGTGLH RLTRGNTIDT EPQYSADGRY IYFTSDRGGN PQIYRMSADG EQAEGVKRVT
FKQGFVTSPR ISPDGKYLAY IANIGGAYRL YILNLATGDA QALTDGTSDE SPSFAANGRY
VLYSTKVGGK RILAAVSVDG NSKRVLSIPG SDVRQPSWGP FMD
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