Gene Pnec_0097 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnec_0097 
Symbol 
ID6183965 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. necessarius STIR1 
KingdomBacteria 
Replicon accessionNC_010531 
Strand
Start bp92222 
End bp92704 
Gene Length483 bp 
Protein Length160 aa 
Translation table11 
GC content43% 
IMG OID641670833 
ProductMammalian cell entry related domain protein 
Protein accessionYP_001797033 
Protein GI171462920 
COG category[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG1463] ABC-type transport system involved in resistance to organic solvents, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.0000148019 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones68 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGAAAAA GTGCAATTGA TGTTTGGGTA GGAATCTTTG TTGCCATTGG TTTATTGGCA 
GCGCTATTTC TCGCGCTAAA AGTAGGCAAT ATGAATGCAG TGTCGTTTGC TCCAACCTAC
AAAATTTCCG CACGCTTCGA CAACATCGGC GGCTTAAAGC CTCGCGCACC CGTTAAAAGT
GCTGGTGTAG TTGTTGGCAG AATTGCCAAT ATCTCTTTTG ATGACAAGAC TTATCAGGCA
ACAGTGGTAA TGACCATTGA AGATTCTTAT AAGTTTCCAA AAGATTCTTC TGCAAAGATT
TTGACATCGG GTTTATTGGG GGAGCAGTAC ATCGGCCTTG AAGCAGGAGG CTCAGATGAT
ATGTTGATCA ATGGCGAGAA GATTTCTCAA GCACAGTCAG CGATTGTTTT AGAAAACTTG
ATTAGTCAAT TTCTCTACAA CAAAGCAGCA GACAGTGGCC AAGAAAAGGG CCCGGCAAAG
TGA
 
Protein sequence
MRKSAIDVWV GIFVAIGLLA ALFLALKVGN MNAVSFAPTY KISARFDNIG GLKPRAPVKS 
AGVVVGRIAN ISFDDKTYQA TVVMTIEDSY KFPKDSSAKI LTSGLLGEQY IGLEAGGSDD
MLINGEKISQ AQSAIVLENL ISQFLYNKAA DSGQEKGPAK