Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnec_0097 |
Symbol | |
ID | 6183965 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
Kingdom | Bacteria |
Replicon accession | NC_010531 |
Strand | + |
Start bp | 92222 |
End bp | 92704 |
Gene Length | 483 bp |
Protein Length | 160 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 641670833 |
Product | Mammalian cell entry related domain protein |
Protein accession | YP_001797033 |
Protein GI | 171462920 |
COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG1463] ABC-type transport system involved in resistance to organic solvents, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.0000148019 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 68 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGAAAAA GTGCAATTGA TGTTTGGGTA GGAATCTTTG TTGCCATTGG TTTATTGGCA GCGCTATTTC TCGCGCTAAA AGTAGGCAAT ATGAATGCAG TGTCGTTTGC TCCAACCTAC AAAATTTCCG CACGCTTCGA CAACATCGGC GGCTTAAAGC CTCGCGCACC CGTTAAAAGT GCTGGTGTAG TTGTTGGCAG AATTGCCAAT ATCTCTTTTG ATGACAAGAC TTATCAGGCA ACAGTGGTAA TGACCATTGA AGATTCTTAT AAGTTTCCAA AAGATTCTTC TGCAAAGATT TTGACATCGG GTTTATTGGG GGAGCAGTAC ATCGGCCTTG AAGCAGGAGG CTCAGATGAT ATGTTGATCA ATGGCGAGAA GATTTCTCAA GCACAGTCAG CGATTGTTTT AGAAAACTTG ATTAGTCAAT TTCTCTACAA CAAAGCAGCA GACAGTGGCC AAGAAAAGGG CCCGGCAAAG TGA
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Protein sequence | MRKSAIDVWV GIFVAIGLLA ALFLALKVGN MNAVSFAPTY KISARFDNIG GLKPRAPVKS AGVVVGRIAN ISFDDKTYQA TVVMTIEDSY KFPKDSSAKI LTSGLLGEQY IGLEAGGSDD MLINGEKISQ AQSAIVLENL ISQFLYNKAA DSGQEKGPAK
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