| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_0088 |
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| Symbol | |
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| ID | 6184167 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010531 |
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| Strand | + |
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| Start bp | 81203 |
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| End bp | 83539 |
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| Gene Length | 2337 bp |
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| Protein Length | 778 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 641670830 |
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| Product | penicillin-binding protein, 1A family |
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| Protein accession | YP_001797030 |
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| Protein GI | 171462917 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG5009] Membrane carboxypeptidase/penicillin-binding protein |
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| TIGRFAM ID | [TIGR02074] penicillin-binding protein, 1A family |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.129531 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 46 |
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| Fosmid unclonability p-value | 0.0128257 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCTTAC CTCCAAAAGA CAAGCCGCCG CTGAATCAGC GTCCCATTCG CCCATCCGAT
AGATGTCCTC GGCAAACACG AGTTCAGCCT GGCTTGTCGC GAAAGAATTC TAGTAATCCA
CTCGTTAAGG CCTTGCTAAT TATTGGCGTA GTTTTTGCTT TAGTAATTAC GCTGCTGATG
GGTTATGCCT TCTTGGTGGC CAAGCCTAAT CTTCCTAAGA TTTCTGCCTT AACTGACTAC
AACCCAAAGA CCCCGCTGCG TATCTATACA GCAGACAAAG TCTTAATTGG TGAATTTGGT
GAGGAACGTC GCAAGGTAAT TCCGTTAAAT GAAATTCCTC AAAGCATGCG CAATGCTGTT
TTAGCAATTG AGGACGATCG CTTCTATTCT CACGGTGGAG TAGATTACGT TGGAATTTTG
CGGGCCACAT TAACCAATTT ACGTGGACAT TTTTCGCAGG GCGCGTCAAC TATCACCATG
CAGGTAGCAC GCAATTTCTT CCTTAGCAAT GAGAAAACCT TTAGTCGCAA AATATATGAA
GTATTGCTGG CCTGGGAAAT TGAGTCGCAA TTAACTAAAG ATAAGATTCT GGAAATCTAT
ATGAACCAGA TTTTCTTAGG ACAGCGGGCT TATGGTTTCT CTAGTGCAGC ACAGATTTAT
TTTGGTAAAG AGTTAAAAGA CATCACCATT GCTGAGTCGG CAATGTTGGC TGGTTTGCCA
AAGGCGCCAT CAGCCTATAA CCCAGTGAGC AACTTCCGTC GTGCCAAGGT TCGTCAAGAG
TACATTCTGC AGCGTATGCG TGATCTTGGC TACATTACAC CTGAGGAATA TCAAAAAGCA
ATAATTGAGG ACTTGCATAT TCGAGGTCTC GGCAATGAAT TTGCGGTTCG CGCAGATTTC
CCAGCAGAGA TGGTTCGACA GTTGCTATTC ACGCAATATG GCGAGGCAAT CTATTCGCAG
GGAATTGATG TTTACACCAC TATCTTGAAG GCAGATCAAG ACGCTGCTTA TAAGGCAGTC
CGAAAAGGAA TTTTTGAATA CGATTTGCGC CATGCATATC GTGATCCAGA GGGTTTTATT
GATCTTCCAG AAGATCCGGT TAAACGTCAG CGTGCCATTG ATGAGGCATT GTTGGCATAC
CCACAGCTAG ATGATTTGCA ATCTGGTGTT GTATTGGATG TGAAGCCAAA AGAAATGCAA
GTCATGATTG CTACTGGCGA CACCATCACC ATTAAAGGCG ATGGTATGAA GCTGGCAGCA
GCATCCATCA CTGATAGTAC TCAGCCTAAG AAACGGTTGA GTCCTGGCGC AGTTGTGCGC
CTTCTGTCAG ATGGCGGGGT TTGGAAATTA GCTCAGCTGC CTCAAGTCGA GGCCGCCTTT
GTATCCATGA ATGCAGAGAC TGGTGCAATT CTTTCATTGG TGGGTGGATT TGATTTCCGT
CGCAATCAAT TCAACCACGT GACACAAGCT TTACGTCAAC CGGGGTCTTC ATTTAAACCC
TTTATTTATG CTGCAGCGAT TGAAAAAGGC TTTACACCCA GCACAATGGT GAATGACGCA
CCGTTATCGA TTGGTAGCAT GGAAACAGGC AGTCAAGCCT GGGAGCCAAA AAATTACTAC
GGTAAATATG ACGGCATGAT GCGCTTGCGT AATGCTTTTG CAAAGTCAAA GAACTTAGTT
TCTGTTCGGA TCATCCGCGC AATTGGACCT TCTTATGCAC AGGAATACAT TCAACGCTTT
GGCTTTGAGC CAGAAAAGCA TCCACCATAT TTAACAATGG CTTTGGGTGC GGGCTCTGTA
ACTCCATTAC AAATGGCTTC CGCATATAGC GTGTTTGCCA ATGGTGGCTA CCGTGTCGAC
CCATTTTTAA TTGACAAGAT GGTGGACTCT AAGGGTACCG TCATGTTTGA AGCAAAGTCT
ACTCGTGCAC GTGAAGATGC GCCTCGCGTG CTTGATGCGC GCACAGCATT TGTCATGGAT
AGCATGTTGC AAGAGGTAAC CAAGACTGGT ACTGCAGCCT CTGCACGCGG TAAGTTGGGA
CGCAATGATA TTGCCGGTAA AACGGGTACA ACCAACGATT CTCACGATGC GTGGTTTGCC
GGCTATAACC CAAAAGTCGT TGCCATTGCT TGGATTGGTT TTGATAAGCC TGCAAGCTTG
GGTGACCGTG AGACTGGCGG CGGCCTTGCC CTACCAATGT GGATCTCTTA TATGGGCACT
GCGCTAAGAG AGATCCCGCA AGAGGCGCGC GAAGTTCCAA GTGGGGTAAC GCAAGTTGAC
GGCGACTGGT TCGTTCCAGA ATTTTCTAAT AATGGTGGCG TGCGCGAACT GCAATAG
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| Protein sequence | MALPPKDKPP LNQRPIRPSD RCPRQTRVQP GLSRKNSSNP LVKALLIIGV VFALVITLLM
GYAFLVAKPN LPKISALTDY NPKTPLRIYT ADKVLIGEFG EERRKVIPLN EIPQSMRNAV
LAIEDDRFYS HGGVDYVGIL RATLTNLRGH FSQGASTITM QVARNFFLSN EKTFSRKIYE
VLLAWEIESQ LTKDKILEIY MNQIFLGQRA YGFSSAAQIY FGKELKDITI AESAMLAGLP
KAPSAYNPVS NFRRAKVRQE YILQRMRDLG YITPEEYQKA IIEDLHIRGL GNEFAVRADF
PAEMVRQLLF TQYGEAIYSQ GIDVYTTILK ADQDAAYKAV RKGIFEYDLR HAYRDPEGFI
DLPEDPVKRQ RAIDEALLAY PQLDDLQSGV VLDVKPKEMQ VMIATGDTIT IKGDGMKLAA
ASITDSTQPK KRLSPGAVVR LLSDGGVWKL AQLPQVEAAF VSMNAETGAI LSLVGGFDFR
RNQFNHVTQA LRQPGSSFKP FIYAAAIEKG FTPSTMVNDA PLSIGSMETG SQAWEPKNYY
GKYDGMMRLR NAFAKSKNLV SVRIIRAIGP SYAQEYIQRF GFEPEKHPPY LTMALGAGSV
TPLQMASAYS VFANGGYRVD PFLIDKMVDS KGTVMFEAKS TRAREDAPRV LDARTAFVMD
SMLQEVTKTG TAASARGKLG RNDIAGKTGT TNDSHDAWFA GYNPKVVAIA WIGFDKPASL
GDRETGGGLA LPMWISYMGT ALREIPQEAR EVPSGVTQVD GDWFVPEFSN NGGVRELQ
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