Gene Pnec_0053 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnec_0053 
SymbolrplB 
ID6183330 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. necessarius STIR1 
KingdomBacteria 
Replicon accessionNC_010531 
Strand
Start bp59641 
End bp60471 
Gene Length831 bp 
Protein Length276 aa 
Translation table11 
GC content48% 
IMG OID641670795 
Product50S ribosomal protein L2 
Protein accessionYP_001796995 
Protein GI171462882 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0090] Ribosomal protein L2 
TIGRFAM ID[TIGR01171] ribosomal protein L2, bacterial/organellar 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000000000000139225 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value1.23059e-22 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGCCTTTGA TGAAGACAAA ACCGACCTCA CCAGGTCGTC GTTCAATGGT CAAGGTGGTC 
AATCCTGACC TCCATAAAGG CAAGCCTTTT GCATCATTGT TAGAGCCACA GTTTCAAAAA
GCAGGTCGTA ACAATAACGG CCACATCACT ACTCGTCATA AGGGCGGTGG TCATAAGCAT
CACTATCGTG TTGTTGACTT CAAACGCAAC GACAAAGATG GTATTCCAGC AAAAGTTGAG
CGCCTGGAAT ACGATCCAAA CCGCAGTGCA AATATTGCAT TGATCTTGTT TGCTGATGGT
GAGTGTCGCT ACATTCCTGC TGCTAAAGGT ATGACTGTTG GTCAGGCAAT CATGAATGGC
TCTGAAGCGC CAATCAAGTC TGGTAACAAT TTGCCAATTC GTAATATTCC AGTCGGTAGC
ACGATTCACT GTGTAGAAAT CATGCCTGGC AAAGGTGCTC AAGTAGCACG CTCTGCTGGT
GGTTCCGCAG TATTGTTAGC TCGTGAAGGC GTATATGCTC AAGTGCGTTT GCGCTCTGGT
GAGGTTCGCC GTGTTTTGAT CGACTGCCGT GCCACTATTG GTGAAGTTGG TAACGAAGAA
CACAGTTTGC GTCAAATTGG TAAAGCAGGT GCAAATCGCT GGCGTGGTAT TCGCCCAACC
GTTCGCGGTG TGGCAATGAA CCCAGTAGAT CACCCACATG GTGGTGGTGA AGGTAGAACT
GGCGAGGGCC GCGTACCTGT ATCTCCATGG GGCACTCCAA CCAAAGGTTA TCGCACACGT
CGTAATAAGC GTACAACTTC GATGATCGTT CAACGTCGCC AAAAACGTTA A
 
Protein sequence
MPLMKTKPTS PGRRSMVKVV NPDLHKGKPF ASLLEPQFQK AGRNNNGHIT TRHKGGGHKH 
HYRVVDFKRN DKDGIPAKVE RLEYDPNRSA NIALILFADG ECRYIPAAKG MTVGQAIMNG
SEAPIKSGNN LPIRNIPVGS TIHCVEIMPG KGAQVARSAG GSAVLLAREG VYAQVRLRSG
EVRRVLIDCR ATIGEVGNEE HSLRQIGKAG ANRWRGIRPT VRGVAMNPVD HPHGGGEGRT
GEGRVPVSPW GTPTKGYRTR RNKRTTSMIV QRRQKR