Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnec_0053 |
Symbol | rplB |
ID | 6183330 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
Kingdom | Bacteria |
Replicon accession | NC_010531 |
Strand | + |
Start bp | 59641 |
End bp | 60471 |
Gene Length | 831 bp |
Protein Length | 276 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 641670795 |
Product | 50S ribosomal protein L2 |
Protein accession | YP_001796995 |
Protein GI | 171462882 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0090] Ribosomal protein L2 |
TIGRFAM ID | [TIGR01171] ribosomal protein L2, bacterial/organellar |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.000000000000139225 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
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Fosmid Coverage information |
Num covering fosmid clones | 5 |
Fosmid unclonability p-value | 1.23059e-22 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGCCTTTGA TGAAGACAAA ACCGACCTCA CCAGGTCGTC GTTCAATGGT CAAGGTGGTC AATCCTGACC TCCATAAAGG CAAGCCTTTT GCATCATTGT TAGAGCCACA GTTTCAAAAA GCAGGTCGTA ACAATAACGG CCACATCACT ACTCGTCATA AGGGCGGTGG TCATAAGCAT CACTATCGTG TTGTTGACTT CAAACGCAAC GACAAAGATG GTATTCCAGC AAAAGTTGAG CGCCTGGAAT ACGATCCAAA CCGCAGTGCA AATATTGCAT TGATCTTGTT TGCTGATGGT GAGTGTCGCT ACATTCCTGC TGCTAAAGGT ATGACTGTTG GTCAGGCAAT CATGAATGGC TCTGAAGCGC CAATCAAGTC TGGTAACAAT TTGCCAATTC GTAATATTCC AGTCGGTAGC ACGATTCACT GTGTAGAAAT CATGCCTGGC AAAGGTGCTC AAGTAGCACG CTCTGCTGGT GGTTCCGCAG TATTGTTAGC TCGTGAAGGC GTATATGCTC AAGTGCGTTT GCGCTCTGGT GAGGTTCGCC GTGTTTTGAT CGACTGCCGT GCCACTATTG GTGAAGTTGG TAACGAAGAA CACAGTTTGC GTCAAATTGG TAAAGCAGGT GCAAATCGCT GGCGTGGTAT TCGCCCAACC GTTCGCGGTG TGGCAATGAA CCCAGTAGAT CACCCACATG GTGGTGGTGA AGGTAGAACT GGCGAGGGCC GCGTACCTGT ATCTCCATGG GGCACTCCAA CCAAAGGTTA TCGCACACGT CGTAATAAGC GTACAACTTC GATGATCGTT CAACGTCGCC AAAAACGTTA A
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Protein sequence | MPLMKTKPTS PGRRSMVKVV NPDLHKGKPF ASLLEPQFQK AGRNNNGHIT TRHKGGGHKH HYRVVDFKRN DKDGIPAKVE RLEYDPNRSA NIALILFADG ECRYIPAAKG MTVGQAIMNG SEAPIKSGNN LPIRNIPVGS TIHCVEIMPG KGAQVARSAG GSAVLLAREG VYAQVRLRSG EVRRVLIDCR ATIGEVGNEE HSLRQIGKAG ANRWRGIRPT VRGVAMNPVD HPHGGGEGRT GEGRVPVSPW GTPTKGYRTR RNKRTTSMIV QRRQKR
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