| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_0048 |
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| Symbol | |
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| ID | 6183209 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010531 |
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| Strand | + |
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| Start bp | 56222 |
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| End bp | 57412 |
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| Gene Length | 1191 bp |
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| Protein Length | 396 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 641670790 |
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| Product | elongation factor Tu |
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| Protein accession | YP_001796990 |
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| Protein GI | 171462877 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0050] GTPases - translation elongation factors |
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| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00485] translation elongation factor TU |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.0000000000026192 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 9.37064e-25 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGGCAAAAG AAAAATTCGA GCGGACAAAA CCGCACGTAA ACGTAGGCAC CATCGGTCAC
GTTGACCACG GTAAAACTAC CTTGACAGCA GCAATCGCGA CCGTGCTTTC TAAAGCATTC
GGTGGCGAAG CAAAAGCATA CGATCAGATC GATGCTGCTC CAGAAGAAAA AGCACGTGGT
ATTACGATTA ATACAGCACA CGTTGAGTAC GAGACAGCTA ACCGTCACTA CGCTCACGTA
GATGGCCCAG GACATGCTGA CTACATTAAG AACATGATTA CTGGTGCTGC TCAGATGGAC
GGCGCAATTT TAGTTTGCTC TGCTGCTGAC GGCCCAATGC CACAAACTCG TGAGCACATC
CTCTTGGCAC GCCAAGTGGG CGTTCCTTAC ATCGTGGTTT TCTTGAACAA ATGCGACATG
GTTGATGACG CTGAATTGCT CGAGTTAGTT GAAATGGAAG TTCGCGAGCT TCTGTCTAAG
TACAACTTCC CTGGCGATGA CACACCAATC ATTCAAGGTT CTGCTAAGTT GGCTCTTGAG
GGCGACGAAG GCAAATTGGG TAAAGAAGCC ATCATGAAAT TGGCTGAAGC TCTTGACTCA
TACATCCCAA CTCCAGAGCG CGCTGTTGAC AGTGCATTCT TGATGCCAGT AGAAGACGTG
TTCTCTATCT CCGGTCGCGG TACTGTTGTG ACTGGCCGTA TCGAGCGCGG CATCATCAAG
GTGGGCGAAG AGATCGAAAT CATTGGTATC AAACCAACAC TTAAGACTAC TTGTACTGGT
ATTGAAATGT TCCGCAAATT GCTCGACCAA GGTCAAACAG GCGATAACGT TGGTATCTTG
TTACGCGGTA CAAAACGTGA AGAAGTTGAG CGCGGCCAAG TATTGGCTAA GCTAGGTTCA
ATCACCCCAC ATACTCACTT TACAGCCGAG GTTTACATCT TGGGTAAAGA CGAAGGTGGT
CGTCATACTC CATTCTTTAA CAACTATCGT CCACAGTTCT ACTTCCGTAC AACGGACGTA
ACTGGTTCAA TCGAGTTGCC AAAAGACAAA GAAATGGTGA TGCCTGGTGA TAACGTGACT
ATTACCGTAA AACTCATCGC TCCAATCGCG ATGGAAGAAG GTTTACGTTT TGCGATCCGT
GAAGGTGGCC GTACTGTTGG TGCCGGTGTG GTTGCAAAGA TTTTGGCTTA A
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| Protein sequence | MAKEKFERTK PHVNVGTIGH VDHGKTTLTA AIATVLSKAF GGEAKAYDQI DAAPEEKARG
ITINTAHVEY ETANRHYAHV DGPGHADYIK NMITGAAQMD GAILVCSAAD GPMPQTREHI
LLARQVGVPY IVVFLNKCDM VDDAELLELV EMEVRELLSK YNFPGDDTPI IQGSAKLALE
GDEGKLGKEA IMKLAEALDS YIPTPERAVD SAFLMPVEDV FSISGRGTVV TGRIERGIIK
VGEEIEIIGI KPTLKTTCTG IEMFRKLLDQ GQTGDNVGIL LRGTKREEVE RGQVLAKLGS
ITPHTHFTAE VYILGKDEGG RHTPFFNNYR PQFYFRTTDV TGSIELPKDK EMVMPGDNVT
ITVKLIAPIA MEEGLRFAIR EGGRTVGAGV VAKILA
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