Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnec_0008 |
Symbol | |
ID | 6184044 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
Kingdom | Bacteria |
Replicon accession | NC_010531 |
Strand | + |
Start bp | 7751 |
End bp | 8977 |
Gene Length | 1227 bp |
Protein Length | 408 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 641670743 |
Product | Extracellular ligand-binding receptor |
Protein accession | YP_001796953 |
Protein GI | 171462840 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 30 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 51 |
Fosmid unclonability p-value | 0.0278078 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGTTAA AGCAAATAAC CGCGTGTCTG GTTGCGGCGA CCATGTTTGG TTTAAACCCG GTGTTTGCGC AAAACGCGCC GAAGATTAGT GGTGACGTTA TTAAGATTGG CGTATTGACT GATCTTTCCT CAACCTATTC TGACTTGGCT GGTCCGGGCG CGGTAATTGC GGCAAAGATG GCAATTGCTG ACTTTTCTAA AGATGGTACT GTGATTGGCA AAAAGATCGA GCTAGTTAGT GCTGATTACC AAAACAAGGC TGATATTGCA GCAAACAAGG CGCGCGAATG GTATGACAAA GATGGTGTGG ACGTTATTGT TGAGTTGGTT TCAACAAACG TTGCTTTGGC GGTAATGGAA GTTGCTGAGC AGAAAAACAA GATTACTCTG GTTTCTGGCG CAGCGTCTTT GCCAATTACC AATGAAAAAT GTACTGCAAA CAACGTTCAT TGGACTTATG ACACTTATGC ACTTTCAAAC GGTACAGCTA AGGCGGTTGT AAAGCAGGGC AAAAAGAATT GGTACTTCAT TACTGCTGAC TACGCTTTTG GTGCAGCCTT GGAGAAAGAT TCAACTAACG TTGTTAATGC TAACGGCGGC AAGGTATTAG GTACCAGCAA GCACCCATTT CCAAATAGCG ACTTTTCATC CTATCTCTTG AAGGCGCAAG CTAGCGGAGC AGATGTAGTG GCCTTAGCAA ATGCCGGACA AGACACCATT AATAGTGTTA GGCAAGCCTC TGAATTTGGT ATTAATAAGA AACAAACCGT TGTTCCTTTG TTAATGTTTA TTACTGATGT TCACTCTTTG GGCTTGAATG CTGCTCAAGG CATGTACCTC ACAGAGGGCT TCTATTGGGA TAAAGACGAC AAGACCCGCG CTTTTGCAAA ACGTTTCATC TTGCAACACA AGCGCATGCC ATCTAGTGTA CAGGCTGGAG TTTATTCTTC CGTTTTTGCT TATTTAAATG CGGTACAAAA AGCTGGCACC GACGATACAC AAGCGGTAAT GAAGGCCTTG AAGTCTACAA ATATCGATGA TGGCCTTTTC AAGGGCAAGA TTCGTGCTGA CGGCAAGTTT GAGCATGATA TGTACTTGCT AGAAGTGAAG AAGCCGTCTG AATCTAAGAG CCCATGGGAT TATTACAACG TTAAGGCGGT GATTCCTGCT GCTGAAGCCA CTCAACCACT TTCATTGTCA AGATGTAAGC TGGTTACCAA CAAGTAA
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Protein sequence | MKLKQITACL VAATMFGLNP VFAQNAPKIS GDVIKIGVLT DLSSTYSDLA GPGAVIAAKM AIADFSKDGT VIGKKIELVS ADYQNKADIA ANKAREWYDK DGVDVIVELV STNVALAVME VAEQKNKITL VSGAASLPIT NEKCTANNVH WTYDTYALSN GTAKAVVKQG KKNWYFITAD YAFGAALEKD STNVVNANGG KVLGTSKHPF PNSDFSSYLL KAQASGADVV ALANAGQDTI NSVRQASEFG INKKQTVVPL LMFITDVHSL GLNAAQGMYL TEGFYWDKDD KTRAFAKRFI LQHKRMPSSV QAGVYSSVFA YLNAVQKAGT DDTQAVMKAL KSTNIDDGLF KGKIRADGKF EHDMYLLEVK KPSESKSPWD YYNVKAVIPA AEATQPLSLS RCKLVTNK
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