Gene Pnap_4987 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnap_4987 
Symbol 
ID4686022 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolaromonas naphthalenivorans CJ2 
KingdomBacteria 
Replicon accessionNC_008762 
Strand
Start bp13196 
End bp16660 
Gene Length3465 bp 
Protein Length1154 aa 
Translation table11 
GC content65% 
IMG OID639826815 
Producthypothetical protein 
Protein accessionYP_973977 
Protein GI121583558 
COG category[V] Defense mechanisms 
COG ID[COG1002] Type II restriction enzyme, methylase subunits 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.0015789 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAAATA ACAACAAGCT GGACAACACC CCAGAAGCCT TCATAGCCCT GTGGCAAGGC 
GTGACCGCCA GCGAACTGTC CACCTCTCAA AGCTTCATCA TCAACCTGTG CGAACTGCTC
GGCGTGCCCC GGCCGCACGC CACGCCCGCG CAGGAATACA TGTTCGAGCG CCCGGTGACC
TTCAGCTATG CCGATGGCAC CAGCAGCGCT GGCCGGGTCG ATTGCTACCG GCGCGGCTGC
TTTATCGCCG AATCAAAAAA ACTCAAGGCC TCCGTGGGCA CCGAACGCTT CAGCCGCAAC
CTGCTCGAAG CCCACGCCCA GGCGCAGAAC TACGCCCGCG CGCTGCCTGC AGACGAAGGG
CGACCGCCGT TTTTGCTGGT CATCGACGTG GGCACCGTCA TCGAGGTGTA TGCCGAGTTC
AGCCGCAGCG GCGGCACCTA CATCCCCTTC CCCGATCCCC GCAGCCACCG TATCGCGCTG
GCAGATTTGC TCAAGCCCGA GGTGCGCGAG CGCCTGCGCC TGATCTGGAC TAATCCCGAC
CAGCTTGACC CTGCCCGCAT CAGCGCCGAG GTCACCGGCA TCGTGTCTGC CCAGCTGGCC
CGGCTGGCCA AGTCGCTGGA AGATGCCAGG CATTCCGCCG CAAACGTAGC CGCCTACCTC
ACACGCGCCC TGTTCAGCAT GTTTGCCGAG GATGTGGAGC TGCTGCCCAA GGGTGCCTTC
TTTGGCCTGC TCAAAGCCCA CCGCGAGGCG CCTGCCACCT TGCAGAGCAT GCTGCAGGCG
CTGTGGGCCG ACATGGATCG GGGCGGCTTC TCCGGCGCGC TGGCCAGGAA CATCCTGAAG
TTCAACGGCA AGCTGTTCAA GGGCGCGAAC ACGCCCGGCT ACAGCCTGTT GCTGACGACC
GCGCAAATTG ATTTGCTGAT CGGAGCGGCC AAAGCCAATT GGCGCGAAGT AGAGCCTGCC
ATCTTTGGCA CGTTGCTGGA ACGCGCGCTC AACCCCGCCG AACGCCACGC CCTGGGCGCC
CACTACACGC CGCGCGCCTA TGTCGAGCGC CTGGTGCTGC CCGCCGTGCT GGAGCCGCTG
CGCGCCGAAT GGGCCAACGT CCAGGCCGCT GCCCTGGTGC TGGTCAATGA AGCCGCCGAA
CTCGACAGCA AGAAGCAAAG CAAGGCCAAG CTGACCGAAG CCCGCGCCGA GGTCCGGCGC
TTTCACCACC GCCTTTGCAC CCTGCGCGTG CTCGATCCCG CCTGCGGGAG CGGCAATTTT
CTTTACGTCA CGCTGGAGCA CTTGAAGCGC CTGGAAGGCG AGGTGTTCAA CCAGTTGGAC
GCGCTGGGCG ACACCCAGGC CAAGCTCACG CTGGAAGGCG AAACCGTCAC GCTGCAGCAG
CTGCGCGGCA TCGAACTCAA CCCGCGCGCT GCCGCCCTGG CCGAACTGGT GCTCTGGATC
GGCTACCTGC AATGGCAGAT CCGCACCTTC GGCAATGCCG GTGTCGCTGA GCCGGTCGTT
CACAACTACG GCAACATTGA AAACCGCGAT GCCGTGCTGG CCTGGGATGG CCGCGCCCCG
GCCCTCAATG CCCACGGCCA GCCGCTCACG CGCTGGGATG GCGTGACCCT GAAAATCCAC
CCGGTGACGG GCGAGTCCGT GCCCGACGAG GCCGCCCAGG TGCCGCAATG GCGCTACAGC
GGCGCACGCC AGGCCGACTG GCCAGCGGCG GATTTCATCG TCGGCAATCC CCCGTTCATT
GGCGCGTCCC CCATGCGTGC CGCGCTGGGC GATGGCTACG TCGAAGCCTT ACGCCAGGCG
TGGCCCCAGG TGCCCGACAG CGCCGATTTC GTCATGTTCT GGTGGTCGCG TGCCGCTGGA
CTGGTGTCAA CCGGCCAGGC CCAGCGCATG GGCCTGATCA CCACCAACAG CCTGCGCCAG
ACCTTCAACC GGCGTGTGGT TCAGGCCGCG CTCGGCCAGT CCACCGCACT GGCCTTTGCC
GTGCCCGACC ATCCGTGGGT CGATAGTGCC GATGGCGCTG CCGTGCGCAT TGCCATGACG
GTGCTGCAGC CGGGAGCCGG GGAAGGCCGC CTGCAGACCG TGACCAGCGA AACGCCGGGC
CAGGATGGGG AAGTGGCCGT GACGCTGGAT GAGCGCCGGG GCGTGATTCA TGCCGATTTG
AGCGTAGGGG TGAATGTGAC GGCTGCCGTG TCGTTGCAAG CCATGTCGGG CATTTCATCG
CCCGGCGTCA AGCTGCACGG GGCGGGGTTC ATCGTGACGC CAGCCGAAGC CGCCGCCCTG
GGCCAGCCAG CCATCATCCG CGACTACCGT AATGGGCGCG ACCTGACCGA CAAGCCGCGC
GGCGTCCAAA TCATCGACGC CTTTGGCCTG AGCGCTGACG AACTGCGCAG CCAATACCCC
GCCGTGTACC AGTGGCTGCT GGATCGGGTC AAGCCTGAAC GCGATGCAAA AGGCACCAGC
AAAGACGGTG CCGGTTATGC GAAGTTGTGG TGGCTCCACG GCAAGCCGCG CCAGGAGATG
CGCAAACAGC TCACCGGCCT ACCCCGCTAC ATCGCCACAG TCGAAACCGC CAAACACCGC
CTGTTCCAGT TCCTCGACGC GAGCATCCTG CCCGACAACA AGCTGATTGC CATCGCCTTG
GACGATGCGT TTTGTTTGGG CGTGCTGTCC AGCCGCCTGC ATACTGCTTG GGCGCTGGCT
ACCGGGAGTT GGTTAGGAGT GGGCAATGAT CCGGTGTACG TTAAATCCCG CTGCTTTGAA
ACCTTCCCTT TCCCCGCAGC AGACACTGGC CTCACGCCCG CGCTGACCGA CAAAATCCGC
CAGCTGGCCG AACAGATCGA CGCCCACCGC AAGAAGCAGC AGGCCGCGCA TGCCGACGTG
ACCCTTACAG GGCTCTACAA CGTGCTGGAA AAGCTCCGCA CAGGTGAAGC ACTCACCGCC
AAGGACAAGA CGCTGCACGA GCATGGCCTC GTCGGCGTGC TGCGCAGCCT TCACGACGAG
CTGGATGCCG CCGTGCTGGC CTCTTACGGC TGGAGCGACC TCTACCCCTT CACCGCTGCA
CCAGACGCGC TCCTGGCGCG TCTGGTGGCT TTGAACGCCC AACGCACAGC CGAAGAAGCC
AAGGGCACTG TCCGCTGGCT GCGTCCCGCG TTCCAGGCGC CGAGCCAGGG CCAGCAAGCA
GCCATCGCCA TGCCCGAGCA AGCAGCCCTC ACCGCCAAAG GAAAGAAAGC CAAGAGCCTG
AAAGCCAGCG CCGCCCAGCC CTGGCCCGCC AGCATGCCCG AACAGGTCAA GGCCGTGGCT
GACGTACTGG CCCAAACCGG AACCGCCATG GACCTCGACG CCATCGCCGC GCACTTCAGC
AGCCGTGGCC GCTGGCGTGA GCGCCTTCCC TCCATCCTTG AGACGCTGGT CGTCCTGGGA
CGGGTCCACG CCCAAAGCGC GAGCCTTTGG GTCAACGTGG GTTAG
 
Protein sequence
MKNNNKLDNT PEAFIALWQG VTASELSTSQ SFIINLCELL GVPRPHATPA QEYMFERPVT 
FSYADGTSSA GRVDCYRRGC FIAESKKLKA SVGTERFSRN LLEAHAQAQN YARALPADEG
RPPFLLVIDV GTVIEVYAEF SRSGGTYIPF PDPRSHRIAL ADLLKPEVRE RLRLIWTNPD
QLDPARISAE VTGIVSAQLA RLAKSLEDAR HSAANVAAYL TRALFSMFAE DVELLPKGAF
FGLLKAHREA PATLQSMLQA LWADMDRGGF SGALARNILK FNGKLFKGAN TPGYSLLLTT
AQIDLLIGAA KANWREVEPA IFGTLLERAL NPAERHALGA HYTPRAYVER LVLPAVLEPL
RAEWANVQAA ALVLVNEAAE LDSKKQSKAK LTEARAEVRR FHHRLCTLRV LDPACGSGNF
LYVTLEHLKR LEGEVFNQLD ALGDTQAKLT LEGETVTLQQ LRGIELNPRA AALAELVLWI
GYLQWQIRTF GNAGVAEPVV HNYGNIENRD AVLAWDGRAP ALNAHGQPLT RWDGVTLKIH
PVTGESVPDE AAQVPQWRYS GARQADWPAA DFIVGNPPFI GASPMRAALG DGYVEALRQA
WPQVPDSADF VMFWWSRAAG LVSTGQAQRM GLITTNSLRQ TFNRRVVQAA LGQSTALAFA
VPDHPWVDSA DGAAVRIAMT VLQPGAGEGR LQTVTSETPG QDGEVAVTLD ERRGVIHADL
SVGVNVTAAV SLQAMSGISS PGVKLHGAGF IVTPAEAAAL GQPAIIRDYR NGRDLTDKPR
GVQIIDAFGL SADELRSQYP AVYQWLLDRV KPERDAKGTS KDGAGYAKLW WLHGKPRQEM
RKQLTGLPRY IATVETAKHR LFQFLDASIL PDNKLIAIAL DDAFCLGVLS SRLHTAWALA
TGSWLGVGND PVYVKSRCFE TFPFPAADTG LTPALTDKIR QLAEQIDAHR KKQQAAHADV
TLTGLYNVLE KLRTGEALTA KDKTLHEHGL VGVLRSLHDE LDAAVLASYG WSDLYPFTAA
PDALLARLVA LNAQRTAEEA KGTVRWLRPA FQAPSQGQQA AIAMPEQAAL TAKGKKAKSL
KASAAQPWPA SMPEQVKAVA DVLAQTGTAM DLDAIAAHFS SRGRWRERLP SILETLVVLG
RVHAQSASLW VNVG