Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnap_4987 |
Symbol | |
ID | 4686022 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polaromonas naphthalenivorans CJ2 |
Kingdom | Bacteria |
Replicon accession | NC_008762 |
Strand | - |
Start bp | 13196 |
End bp | 16660 |
Gene Length | 3465 bp |
Protein Length | 1154 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 639826815 |
Product | hypothetical protein |
Protein accession | YP_973977 |
Protein GI | 121583558 |
COG category | [V] Defense mechanisms |
COG ID | [COG1002] Type II restriction enzyme, methylase subunits |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.0015789 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAAAAATA ACAACAAGCT GGACAACACC CCAGAAGCCT TCATAGCCCT GTGGCAAGGC GTGACCGCCA GCGAACTGTC CACCTCTCAA AGCTTCATCA TCAACCTGTG CGAACTGCTC GGCGTGCCCC GGCCGCACGC CACGCCCGCG CAGGAATACA TGTTCGAGCG CCCGGTGACC TTCAGCTATG CCGATGGCAC CAGCAGCGCT GGCCGGGTCG ATTGCTACCG GCGCGGCTGC TTTATCGCCG AATCAAAAAA ACTCAAGGCC TCCGTGGGCA CCGAACGCTT CAGCCGCAAC CTGCTCGAAG CCCACGCCCA GGCGCAGAAC TACGCCCGCG CGCTGCCTGC AGACGAAGGG CGACCGCCGT TTTTGCTGGT CATCGACGTG GGCACCGTCA TCGAGGTGTA TGCCGAGTTC AGCCGCAGCG GCGGCACCTA CATCCCCTTC CCCGATCCCC GCAGCCACCG TATCGCGCTG GCAGATTTGC TCAAGCCCGA GGTGCGCGAG CGCCTGCGCC TGATCTGGAC TAATCCCGAC CAGCTTGACC CTGCCCGCAT CAGCGCCGAG GTCACCGGCA TCGTGTCTGC CCAGCTGGCC CGGCTGGCCA AGTCGCTGGA AGATGCCAGG CATTCCGCCG CAAACGTAGC CGCCTACCTC ACACGCGCCC TGTTCAGCAT GTTTGCCGAG GATGTGGAGC TGCTGCCCAA GGGTGCCTTC TTTGGCCTGC TCAAAGCCCA CCGCGAGGCG CCTGCCACCT TGCAGAGCAT GCTGCAGGCG CTGTGGGCCG ACATGGATCG GGGCGGCTTC TCCGGCGCGC TGGCCAGGAA CATCCTGAAG TTCAACGGCA AGCTGTTCAA GGGCGCGAAC ACGCCCGGCT ACAGCCTGTT GCTGACGACC GCGCAAATTG ATTTGCTGAT CGGAGCGGCC AAAGCCAATT GGCGCGAAGT AGAGCCTGCC ATCTTTGGCA CGTTGCTGGA ACGCGCGCTC AACCCCGCCG AACGCCACGC CCTGGGCGCC CACTACACGC CGCGCGCCTA TGTCGAGCGC CTGGTGCTGC CCGCCGTGCT GGAGCCGCTG CGCGCCGAAT GGGCCAACGT CCAGGCCGCT GCCCTGGTGC TGGTCAATGA AGCCGCCGAA CTCGACAGCA AGAAGCAAAG CAAGGCCAAG CTGACCGAAG CCCGCGCCGA GGTCCGGCGC TTTCACCACC GCCTTTGCAC CCTGCGCGTG CTCGATCCCG CCTGCGGGAG CGGCAATTTT CTTTACGTCA CGCTGGAGCA CTTGAAGCGC CTGGAAGGCG AGGTGTTCAA CCAGTTGGAC GCGCTGGGCG ACACCCAGGC CAAGCTCACG CTGGAAGGCG AAACCGTCAC GCTGCAGCAG CTGCGCGGCA TCGAACTCAA CCCGCGCGCT GCCGCCCTGG CCGAACTGGT GCTCTGGATC GGCTACCTGC AATGGCAGAT CCGCACCTTC GGCAATGCCG GTGTCGCTGA GCCGGTCGTT CACAACTACG GCAACATTGA AAACCGCGAT GCCGTGCTGG CCTGGGATGG CCGCGCCCCG GCCCTCAATG CCCACGGCCA GCCGCTCACG CGCTGGGATG GCGTGACCCT GAAAATCCAC CCGGTGACGG GCGAGTCCGT GCCCGACGAG GCCGCCCAGG TGCCGCAATG GCGCTACAGC GGCGCACGCC AGGCCGACTG GCCAGCGGCG GATTTCATCG TCGGCAATCC CCCGTTCATT GGCGCGTCCC CCATGCGTGC CGCGCTGGGC GATGGCTACG TCGAAGCCTT ACGCCAGGCG TGGCCCCAGG TGCCCGACAG CGCCGATTTC GTCATGTTCT GGTGGTCGCG TGCCGCTGGA CTGGTGTCAA CCGGCCAGGC CCAGCGCATG GGCCTGATCA CCACCAACAG CCTGCGCCAG ACCTTCAACC GGCGTGTGGT TCAGGCCGCG CTCGGCCAGT CCACCGCACT GGCCTTTGCC GTGCCCGACC ATCCGTGGGT CGATAGTGCC GATGGCGCTG CCGTGCGCAT TGCCATGACG GTGCTGCAGC CGGGAGCCGG GGAAGGCCGC CTGCAGACCG TGACCAGCGA AACGCCGGGC CAGGATGGGG AAGTGGCCGT GACGCTGGAT GAGCGCCGGG GCGTGATTCA TGCCGATTTG AGCGTAGGGG TGAATGTGAC GGCTGCCGTG TCGTTGCAAG CCATGTCGGG CATTTCATCG CCCGGCGTCA AGCTGCACGG GGCGGGGTTC ATCGTGACGC CAGCCGAAGC CGCCGCCCTG GGCCAGCCAG CCATCATCCG CGACTACCGT AATGGGCGCG ACCTGACCGA CAAGCCGCGC GGCGTCCAAA TCATCGACGC CTTTGGCCTG AGCGCTGACG AACTGCGCAG CCAATACCCC GCCGTGTACC AGTGGCTGCT GGATCGGGTC AAGCCTGAAC GCGATGCAAA AGGCACCAGC AAAGACGGTG CCGGTTATGC GAAGTTGTGG TGGCTCCACG GCAAGCCGCG CCAGGAGATG CGCAAACAGC TCACCGGCCT ACCCCGCTAC ATCGCCACAG TCGAAACCGC CAAACACCGC CTGTTCCAGT TCCTCGACGC GAGCATCCTG CCCGACAACA AGCTGATTGC CATCGCCTTG GACGATGCGT TTTGTTTGGG CGTGCTGTCC AGCCGCCTGC ATACTGCTTG GGCGCTGGCT ACCGGGAGTT GGTTAGGAGT GGGCAATGAT CCGGTGTACG TTAAATCCCG CTGCTTTGAA ACCTTCCCTT TCCCCGCAGC AGACACTGGC CTCACGCCCG CGCTGACCGA CAAAATCCGC CAGCTGGCCG AACAGATCGA CGCCCACCGC AAGAAGCAGC AGGCCGCGCA TGCCGACGTG ACCCTTACAG GGCTCTACAA CGTGCTGGAA AAGCTCCGCA CAGGTGAAGC ACTCACCGCC AAGGACAAGA CGCTGCACGA GCATGGCCTC GTCGGCGTGC TGCGCAGCCT TCACGACGAG CTGGATGCCG CCGTGCTGGC CTCTTACGGC TGGAGCGACC TCTACCCCTT CACCGCTGCA CCAGACGCGC TCCTGGCGCG TCTGGTGGCT TTGAACGCCC AACGCACAGC CGAAGAAGCC AAGGGCACTG TCCGCTGGCT GCGTCCCGCG TTCCAGGCGC CGAGCCAGGG CCAGCAAGCA GCCATCGCCA TGCCCGAGCA AGCAGCCCTC ACCGCCAAAG GAAAGAAAGC CAAGAGCCTG AAAGCCAGCG CCGCCCAGCC CTGGCCCGCC AGCATGCCCG AACAGGTCAA GGCCGTGGCT GACGTACTGG CCCAAACCGG AACCGCCATG GACCTCGACG CCATCGCCGC GCACTTCAGC AGCCGTGGCC GCTGGCGTGA GCGCCTTCCC TCCATCCTTG AGACGCTGGT CGTCCTGGGA CGGGTCCACG CCCAAAGCGC GAGCCTTTGG GTCAACGTGG GTTAG
|
Protein sequence | MKNNNKLDNT PEAFIALWQG VTASELSTSQ SFIINLCELL GVPRPHATPA QEYMFERPVT FSYADGTSSA GRVDCYRRGC FIAESKKLKA SVGTERFSRN LLEAHAQAQN YARALPADEG RPPFLLVIDV GTVIEVYAEF SRSGGTYIPF PDPRSHRIAL ADLLKPEVRE RLRLIWTNPD QLDPARISAE VTGIVSAQLA RLAKSLEDAR HSAANVAAYL TRALFSMFAE DVELLPKGAF FGLLKAHREA PATLQSMLQA LWADMDRGGF SGALARNILK FNGKLFKGAN TPGYSLLLTT AQIDLLIGAA KANWREVEPA IFGTLLERAL NPAERHALGA HYTPRAYVER LVLPAVLEPL RAEWANVQAA ALVLVNEAAE LDSKKQSKAK LTEARAEVRR FHHRLCTLRV LDPACGSGNF LYVTLEHLKR LEGEVFNQLD ALGDTQAKLT LEGETVTLQQ LRGIELNPRA AALAELVLWI GYLQWQIRTF GNAGVAEPVV HNYGNIENRD AVLAWDGRAP ALNAHGQPLT RWDGVTLKIH PVTGESVPDE AAQVPQWRYS GARQADWPAA DFIVGNPPFI GASPMRAALG DGYVEALRQA WPQVPDSADF VMFWWSRAAG LVSTGQAQRM GLITTNSLRQ TFNRRVVQAA LGQSTALAFA VPDHPWVDSA DGAAVRIAMT VLQPGAGEGR LQTVTSETPG QDGEVAVTLD ERRGVIHADL SVGVNVTAAV SLQAMSGISS PGVKLHGAGF IVTPAEAAAL GQPAIIRDYR NGRDLTDKPR GVQIIDAFGL SADELRSQYP AVYQWLLDRV KPERDAKGTS KDGAGYAKLW WLHGKPRQEM RKQLTGLPRY IATVETAKHR LFQFLDASIL PDNKLIAIAL DDAFCLGVLS SRLHTAWALA TGSWLGVGND PVYVKSRCFE TFPFPAADTG LTPALTDKIR QLAEQIDAHR KKQQAAHADV TLTGLYNVLE KLRTGEALTA KDKTLHEHGL VGVLRSLHDE LDAAVLASYG WSDLYPFTAA PDALLARLVA LNAQRTAEEA KGTVRWLRPA FQAPSQGQQA AIAMPEQAAL TAKGKKAKSL KASAAQPWPA SMPEQVKAVA DVLAQTGTAM DLDAIAAHFS SRGRWRERLP SILETLVVLG RVHAQSASLW VNVG
|
| |