| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_4239 |
|---|
| Symbol | |
|---|
| ID | 4685337 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008757 |
|---|
| Strand | + |
|---|
| Start bp | 112141 |
|---|
| End bp | 113439 |
|---|
| Gene Length | 1299 bp |
|---|
| Protein Length | 432 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 639826099 |
|---|
| Product | conjugation TrbI family protein |
|---|
| Protein accession | YP_973264 |
|---|
| Protein GI | 121582822 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG2948] Type IV secretory pathway, VirB10 components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.518635 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCTCGA ATGTGCAGCC TCCACCGCTG ATGACCGATC CGCTGAACAT GTCAGCCCCG
GAGGAATTGA TCGATCCGAT TTCCAGAGAA CAACAGGATG AAATCAGCAG ACAACAAGAG
GCGATGGAGC GCGGCAAGCC AACGCGAAAC CTTAAAAAAT TAGGCATCGT GCTTGTAGGC
GCTGCAGTAG CTGGCTATAT GCTTTACCCC TCCTTGTTTC CACCATCTAA GGAAAAAAAA
ACTGTCGTGG TTGAAAAGTC AGATGCCCAT CAGGAAACAC CTGGCTCCAT CATCGAACAG
CTCAAGAGTC AGCCCAAGCC TCCGCCTCCA ACTGTAGAGG TTTCTGTCCC GCCTCCACAA
GTTCATCCCA CCCCTCCGGC CGGAATGTCA AATAACCCGG ACGGAGCCAG CGTCTTGACG
CCCCGGCAAA TCGAGGCCAA TCGACGCGAA ACCATCATGG CTAGCGCAAT GGAGCCGAGC
GACATCAACA TTACGCTGCG GGATCAACCG AGAAAAAAGG CTGACTCTGA AGCAGACGGT
CCGGACTCTG CATTGGCAAG GGCACTGGCG CAACAAAATG GCATCCTTGA AAAATCGCTG
GCCCAACCCG TTGAAAAACC TCAACCGCTC GCCAAGGGCA GCAATCAGGA CGAGTTTTTA
CTGCGCACGC GCAACGCCTC GCTAGAGGAA GCAACAAAAC TCGCACCCGC AAGAGCTGCA
GCGGCTTTGT ACCAGGGCAC GATTGTGCAA GTCATTCTGG ACCGCGCCAT CAACACAGAC
AACCCAGGCA CGGCCAGGGG TAGGGTGCGC AGTGACGTTT ATGACTCCGT GACCCAGAGC
ATTTTGCTGA TCCCGCGTGG CTCGCTCGTC ATCCTTCCCT ACCTGAACAG TATGCTGGTC
GGCGACTCGC GCATCCTCGT GGCAGGTGAA CGGTTGATCT TCCCGAACGG TAAAAGCATG
TCGCTGTCTG GCACGCCGGC AGCAGACATG CAAGGCGCCA GCGGCATTCC GGCTGATGTG
GACAATCACT TTTATGAGAT GTTCAAAACC TCGTTCATGG TCGGCGCAGC ATCGTTGCTA
CTTCCGAAAA GTCAGCAAAA CGTGTCCATT TCTGACACGG TATCTGGTGG CAGCAGAACG
GGTGGCTCGA TTTTGGGAAC AACGCTTTAC GACACGATCA AGCAGATTTC AGCACGCAAT
GCCAGCATCA GGCCCACGGG AAGTATCGAA GTGGGTGAGC CTTTCACCTT GATGCTGTCC
AAGGACATCG AGCTCGAACC GTACAGGGGC CGCAAGTGA
|
|---|
| Protein sequence | MASNVQPPPL MTDPLNMSAP EELIDPISRE QQDEISRQQE AMERGKPTRN LKKLGIVLVG
AAVAGYMLYP SLFPPSKEKK TVVVEKSDAH QETPGSIIEQ LKSQPKPPPP TVEVSVPPPQ
VHPTPPAGMS NNPDGASVLT PRQIEANRRE TIMASAMEPS DINITLRDQP RKKADSEADG
PDSALARALA QQNGILEKSL AQPVEKPQPL AKGSNQDEFL LRTRNASLEE ATKLAPARAA
AALYQGTIVQ VILDRAINTD NPGTARGRVR SDVYDSVTQS ILLIPRGSLV ILPYLNSMLV
GDSRILVAGE RLIFPNGKSM SLSGTPAADM QGASGIPADV DNHFYEMFKT SFMVGAASLL
LPKSQQNVSI SDTVSGGSRT GGSILGTTLY DTIKQISARN ASIRPTGSIE VGEPFTLMLS
KDIELEPYRG RK
|
|---|
| |