| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_4227 |
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| Symbol | |
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| ID | 4685293 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas naphthalenivorans CJ2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008757 |
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| Strand | + |
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| Start bp | 97607 |
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| End bp | 100072 |
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| Gene Length | 2466 bp |
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| Protein Length | 821 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 639826087 |
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| Product | Type IV secretory pathway VirB4 components-like protein |
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| Protein accession | YP_973252 |
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| Protein GI | 121582810 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3451] Type IV secretory pathway, VirB4 components |
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| TIGRFAM ID | [TIGR00929] type IV secretion/conjugal transfer ATPase, VirB4 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.267872 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTCATTG CTCTTAAAAA AGAAGCGTCG GAATCAAAGT CCTCGCATTC GGAATTGCTG
CCCTGGCTCT GCCATGCATC ACCCGACTGG ATTTTATGCA AGGACGGCTC TTTGCTATCC
GGGATGGAGT ACCGGTGCCT TGATATTGAC AATATCTCCG AGCACACGCT CAAAAAAGCG
TTGCTCGAAC TTCAGGCGTC ACTCAAAACG CTTGATGAGC GGTTCTATGT CTGGTGGACC
ATCGATAAGA AAAGGGACAG CACCCGGCAC AAAAGCAACT TTCCCAATGA TGCCGCTCAG
AAACTTGACG ATTTGATAGG CAAAGCCCTG GACGCCGGGA AGATGTTCAA CATTACCTAT
CGCATGTACA TCCTGTACAC GGGCGAGACG GGCATGTACG CATACATGGA CAACGTCAGA
AGGCTGGTCA ACGAAGAGAA TACCTCTGTC ATCACTGCGA TGCTCAAGAG CCTTAACCCG
GCTACCTTTA CCAGCGCATC AGCCTTGTCA GATGCGCGCC AGCTCGACCA AAATCTTGCC
ACTGCCGAGG GCGCAGTCCA GCAGTTCATG AACTCGCACA GCATCATGAG CTTAAAACGG
CTGAGCGGCT GGGACCTGGA CAATGCGCTG CTTCAAAGCG GCAACCTGTC CATTGCCTTG
AACAGCACCT ACAAGCCGCC AGTCGGTGCG ATGCTCGATG AATACTGCGC ATTGAGCGAC
GTCAAAATTG GCCGGGAAGT TATTTCAGTG TCCGGTCCCA ATCGAACCAT CTTCGCAGCA
AACCTCACAC TCAAGAACTA CCCCACCAAT CTCACGCCGG GCCTGATGGA GCGGTTGGTG
GCGAGTCCTT TGGAATTCAG GCTCACGCAT GTGATGCGCT GCCTGGGGCA AGCTGCAGCG
GTCAAAACGC TGAAGGAAGT CAGCAACTAT TACTTCATGA ACCAGAGCAC GTTCATGCAA
AGGGCGATTG CCAAAGCAAC ATCGTCTGAG CCGGGCGTCG ATCCTGGCAA AGCCGACCTT
TACATGGAAA GCCTCGAAGC ATTGCGCAGA CAAACAGTCG AAGGGCTTGG ATGGCTGTAC
CACGCCATGA CAGTGACCGT TTTTGGAACT TCACTGAATC ACCTGGAGCA AGAAGTAAAC
GAGGTGGGGC GAAATCTCAG CGATGTGCCA TTCATCAGGG AACGGCTGGG CCTGAAAGCG
AGCTTTTACT CCATGATTCC CGGCCAGTGG TCGATGCAGC AGCGGCTCAT GCTTGTCAAC
GCCGAGGTCG CCGCGGATTG CGCTCCAATC TACACGATTG ACCAGGGCTC GCCAAAAAGC
CAGCACTTCA GCGAAACCAC GGGCACCTAC CAGCCGAGCC TGTGCCTGTT CCAAACGGTC
TATGGGACCC CGTACCACTA CAACCCTCAC GTCGGGCAAC TCGGGCACAC CATGCTCGTG
ATGCCTTCCG GGAACGGTAA AACGACGTTC GCCAACTTGT GCCTGGCGCA GTTCCAGCGC
TACCCCGATG CACAGGTGTT TATCTTCGAC AGGGATTTTT CCTGCCGGAT CATTACCGGC
CTCGTTGGCG GAACGCACAT CGACCTCAAG TCGGGCATCA AGCTCAACCC GATGGCAGCC
GTCAATGAAG GGCCCATGGG GCGGCTCTGG GCGCGGGAGT TTTTGCTTCA AAGACTGGAA
GAGAGCGGCA CTCAAGTAAC GCCCGAAGAT CGAAATGTGA TCGATGACAC GCTGCTTGCG
CTGTCCAAGA CCGACCAGCC CATATCCATG GGCACGGTGG CCGGTGTTTT GCCACGAAAA
CTCGAAGCCG CACTGGCGGA ATGGGTCAAC AACGGTCCTT ACGGGATGTT CGACAGCACG
GTGGACGAGC TGAGCCTGGA ATCGTGGACC TGCATCGAGA TGAAGGACAT CATGGCCGTG
GACCGGCTGG CCCGGGCATT TCTGGACCAT GCCTTTCGCA TGATCATGAA ACGTCTGGAC
GGGCGGCCGA CCTTTATCTA TCTTGAAGAA GCGTCCTTTC TGCTCAACAG TCCGCAGTTT
CTCAGGGCAT TCGATGACTG GCTCAAGACG TTTCGAAAAC TCAATGCGTT TGTCTGGCTG
ACCATCCAGT CGCCCGAGTC GGTTTCCGGA ATTGACGATG AGCGCGTGCG CGCCACCATT
GCCGACAACA TACCGAACCT GATTCTTGGC TACAACCAAC GACTGGAAAA CCATCGGGAA
CTCTACAAAT CCATGTTTGG CATGCACGAC GAACAAGTCA ACTTGCTGGC AAACCTGAAA
CCCAAACGCG ATTACCTGCT AGTTGCCGAT GGTATTTGCC GCGTGATGGG CACAAACCTA
AGCAAAGATG CATTGGCTTA CTTGCGATCG GAGATGCCCT ATCAAGACCT CTTCACGAAA
GCGCAAGAAA GCGGGCGCAC AGACTGGCGC GACTTCTATA TCGCCGAAGC ACTTAAAAGG
AGCTAA
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| Protein sequence | MVIALKKEAS ESKSSHSELL PWLCHASPDW ILCKDGSLLS GMEYRCLDID NISEHTLKKA
LLELQASLKT LDERFYVWWT IDKKRDSTRH KSNFPNDAAQ KLDDLIGKAL DAGKMFNITY
RMYILYTGET GMYAYMDNVR RLVNEENTSV ITAMLKSLNP ATFTSASALS DARQLDQNLA
TAEGAVQQFM NSHSIMSLKR LSGWDLDNAL LQSGNLSIAL NSTYKPPVGA MLDEYCALSD
VKIGREVISV SGPNRTIFAA NLTLKNYPTN LTPGLMERLV ASPLEFRLTH VMRCLGQAAA
VKTLKEVSNY YFMNQSTFMQ RAIAKATSSE PGVDPGKADL YMESLEALRR QTVEGLGWLY
HAMTVTVFGT SLNHLEQEVN EVGRNLSDVP FIRERLGLKA SFYSMIPGQW SMQQRLMLVN
AEVAADCAPI YTIDQGSPKS QHFSETTGTY QPSLCLFQTV YGTPYHYNPH VGQLGHTMLV
MPSGNGKTTF ANLCLAQFQR YPDAQVFIFD RDFSCRIITG LVGGTHIDLK SGIKLNPMAA
VNEGPMGRLW AREFLLQRLE ESGTQVTPED RNVIDDTLLA LSKTDQPISM GTVAGVLPRK
LEAALAEWVN NGPYGMFDST VDELSLESWT CIEMKDIMAV DRLARAFLDH AFRMIMKRLD
GRPTFIYLEE ASFLLNSPQF LRAFDDWLKT FRKLNAFVWL TIQSPESVSG IDDERVRATI
ADNIPNLILG YNQRLENHRE LYKSMFGMHD EQVNLLANLK PKRDYLLVAD GICRVMGTNL
SKDALAYLRS EMPYQDLFTK AQESGRTDWR DFYIAEALKR S
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