| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_4200 |
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| Symbol | |
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| ID | 4685205 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas naphthalenivorans CJ2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008757 |
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| Strand | + |
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| Start bp | 77023 |
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| End bp | 78396 |
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| Gene Length | 1374 bp |
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| Protein Length | 457 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 639826060 |
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| Product | conjugal transfer protein TrbL |
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| Protein accession | YP_973225 |
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| Protein GI | 121582783 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3846] Type IV secretory pathway, TrbL components |
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| TIGRFAM ID | [TIGR02783] P-type conjugative transfer protein TrbL |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACGACA TTTCCGTCAT CGACCGATTC CTCAATGTTT TCTCGCGTTA CATCGATTCT
GGTTTCGGTC TGCTGGGCGG CGAAGTTGCG TTCCTGACCG CCACGCTGGT GGCAATCGAC
ATGACACTGG CCGGTCTGTT CTGGGCGATG AGCCATGCCA GCGGTGGCGG CGACGACATC
ATCGGCAAGC TCATCAAGAA GGTGCTGTAC GTGGGTGCCT TCGCCTACAT CATCGGCAAC
TTCAACCTGC TGGCCGGCAT CCTGTTCCGA TCTTTCGCAG GCTTGGGATT GGTGGCGTCG
GGTTCGACCA TCACCCAGGC CGAGTTCCTG CAGCCGGGGC GGCTGGCCAA GGTCGGCATC
GATGCCGGGG CGCCCATCCT GGAGCAGATC AGCGCGATGG CGGGCTTCCC CGAGGTATTC
GTGAACCTCG ATGCCATCAC GGTGATGCTG CTGGCCTGGC TGGTGGTGGT CATGAGTTTC
TTCGTGCTGG CGGTGCAGCT CTTCGTCACG CTGATCGAGT TCAAGCTGAC CACGCTCGCC
GGCTTCGTGC TGGTGCCGTT CGCACTGTGG AACAAGACCT CGTTTCTCGC TGAAAAGGTG
TTGGGCAACG TGGTGTCGTC AGGCATCAAG GTGCTGGTGC TGGCGGTCAT CGTAGGGATT
GGCACGGGGT TGTTTGCCGA ATTCCAGGTG ACGCCGGATG AACCCTCCAT CGACCACGCA
CTGACCATCA TGTTGGCTGC ACTGGCGATG CTGGGTCTTG GGATCTTCGG GCCAGGCATC
GCGACTGGGC TGGTATCTGG GGCACCGCAG TTGGGTGCAG GTGCTGTTGC CGGAACCGCA
TTGGGTGTCG CGGGAGCAGC GGTTGCCGTG GGTGCTGCCG CCACCGGCGT GGGCGGTGCG
GTGGCTGCCG GTGCGCGTAT GGCGCCGGGT GCCGCAAAGA TGGCCGCGAG CGGTGCCCGC
TCGATGGCCT CGACCGCCAG CAGCGCGAAG TCCGCGTTCC AGGCCGGCTC TGCCGGTGCA
GGTGGTGGAC TCAAGGGTGC GGCAGCAGGA TTGGGCAACG TCGCCAAGAC GGGCGCGCAA
TCGGTGGGGC AGAAGGTCGC TGCCGGAGCC AAGTCGATGA AGGACCGGAC TGCGGCGGCC
ATCAAGCCGG ATGCCTCGGC ATCCGGGACT GGCGCTGGTG CCGGAGCTGG CTCGGCCGCT
CAAGGCGGCA ACGATGCCGC ACCCACAGAT ACCCAGCAAC CCGCGTGGGC CAAGAGCCTG
CATCGCCGCC AGCAGATCAG CCATGCCGCT TCGACCGTCG CCCACACGCT GCGCGGTGGA
GACGGCGGCG GCTCGGGCAG TAGCCCCAGC CTGCGCGACC CCTCGGATTC CTAA
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| Protein sequence | MNDISVIDRF LNVFSRYIDS GFGLLGGEVA FLTATLVAID MTLAGLFWAM SHASGGGDDI
IGKLIKKVLY VGAFAYIIGN FNLLAGILFR SFAGLGLVAS GSTITQAEFL QPGRLAKVGI
DAGAPILEQI SAMAGFPEVF VNLDAITVML LAWLVVVMSF FVLAVQLFVT LIEFKLTTLA
GFVLVPFALW NKTSFLAEKV LGNVVSSGIK VLVLAVIVGI GTGLFAEFQV TPDEPSIDHA
LTIMLAALAM LGLGIFGPGI ATGLVSGAPQ LGAGAVAGTA LGVAGAAVAV GAAATGVGGA
VAAGARMAPG AAKMAASGAR SMASTASSAK SAFQAGSAGA GGGLKGAAAG LGNVAKTGAQ
SVGQKVAAGA KSMKDRTAAA IKPDASASGT GAGAGAGSAA QGGNDAAPTD TQQPAWAKSL
HRRQQISHAA STVAHTLRGG DGGGSGSSPS LRDPSDS
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