| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_4198 |
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| Symbol | |
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| ID | 4685213 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas naphthalenivorans CJ2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008757 |
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| Strand | + |
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| Start bp | 73846 |
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| End bp | 76287 |
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| Gene Length | 2442 bp |
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| Protein Length | 813 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 639826058 |
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| Product | conjugal transfer ATPase TrbE |
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| Protein accession | YP_973223 |
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| Protein GI | 121582781 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3451] Type IV secretory pathway, VirB4 components |
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| TIGRFAM ID | [TIGR00929] type IV secretion/conjugal transfer ATPase, VirB4 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.330213 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 0.981224 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATGAATC TCGCTGAATA CCGCAAACGT CCCGCACTGC TGGCCGATTG GTTGCCCTGG
GCCGGGCTGG TTGCGCCGGG CGTTGTGCTC AACAAGGATG GCTCGTTCCA GCGCACGGCG
CGCTTTCGCG GGCCGGACCT GGACAGCGCC ACGCAGGGCG AACTGATCGC CACGTCCGCG
CAGCTGAACA ATGCGCTGCG CCGGTTGGGG TCAGGCTGGG CCTTGTTCGT GGAGGCCGAA
CGGCGCGCCG CTGCCGACTA CCCGTACTCG GATTTTCCGG AGCCGCTGTC CTGGCTGGTG
GACGAAGAAC GGCGGGCTTC GTTCGAGGAA GACCACAGCC ACTTCGAGAG CGGCTACCAC
CTGACGCTGG CGTACCTGCC CGCTGAGGAA TCTCGCGTCC GCGCGGCCAA GCTGCTGTAC
GAGAACACGC CACAGCGCGG CGTGGACTGG CGCGAGCGGC TGGAGTCGTT CATCTCTGAG
ACGGATCGTT TTTTCGACTT GCTCGATGGG GTCATGCCGG AGATCGTCTG GCTGGACGAC
AGCCAGACCT TGACCTACCT GCATGCGACG GTTTCGGCGC GGCGCTACCG GGTGGCGGTG
CCGGAACATC CGTTCTACCT CGATGCCTTG CTGGCCGATT CCGCGCTGGT CGGAGGTTTG
GCCCCGATGC TGGGTGACCA GCACCTACGG GTGGCGTCGG TGCGCGGTTT CCCCACCTCG
ACCTGGCCGG GTCTCCTGGA CGACTTGAAC CGCCTGGGCT TCGCCTACCG CTGGTCCACA
CGCTTTCTCT GCATGGACAA GGCCGACGCG GAAACGGAGT TGGGCCGACT GCGCCGCCAG
TGGTTCGCCA AGCGCAAAAA CGTGGTGGCC TTGCTGCGCG AAACCATCTT CCAGCAGGAA
AGCCCGCTGG TCGATACCGA TGCCTCGAAC AAGGCCAACG ATGCCGATGC CGCTTTGCAG
GAACTGGGCA GCGATCAAGT CGCCTTCGGC TATGTTACTG CCACGGTGAC GGTGCTCGAT
CCAGATTCTT CGGTGGCCGA TGAAAAACTG CGTCGGATTG AACGTGTCAT CCAAGGCCGC
GGTTTCGTCA CGATCCCGGA AACGCTCAAT GCCGTGGAGG CGTGGCTGTC CTCGATTCCG
GGTAATGCCT ACGCCAACGT GCGACAGCCC ATCATCTCGA CGCTAAATCT GGCGCACCTG
ATGCCAGTGT CGGCCGTATG GGCCGGGCCG GAGCGCAATA ACCATTTGGA CGGGCCGCCG
CTGATCGTGA CGCGCACCGA TGGCGCCACG CCGTTCCGGC TGGTGACGCA CATCGGCGAC
GTGGGCCACA CGCTGGTGGT CGGGCCGACT GGTATGGGCA AGTCGGTGCT GCTGGCTACC
TTGGCGATGC AGTTCCGCCG CTATCCCGGT TCGCGCATCT TTGCCTTCGA CATGGGTCGC
TCGATGCGCG CCACCACCCT GGGACTGGGC GGCGAACATT ACGACCTGGG CAAAGGATGG
GAGGAAGGTG GCGAAATCGC CTTCCAGCCG CTGGCCCGCA TCGACCAGGA CGGCTACCGC
ACCTGGGCCG CCGAATGGCT GGAAGGCCGC TTACTGCATG AAGGCGCAGC CGTCGGCCCG
GAAGAAAAGG CCATGGTCTG GTCGGCGCTG GGAAGTCTGG CGGGCGCACC GGTGGAGCAG
CGCACCCTGA CCGGGCTGTC GGTACTGCTG CAATCGAATG CCTTGCGCCA GGCCTTGCAG
CCTTACGTGC TGGGCGGCGC GCACGGCAAG CTGCTGGATG CGGATTCGGA TCGCTTGGGT
TCTGGTTCCG TCCAGTGCTT CGAGATGGAA GAGCTGATGC ATAGCAAGGC CGCCGTGCTG
GCCGTGCTGG GCTATCTGTT CGCCCGCTTC GATGAGCGGT TCGACGGCGC GCCGACCTTG
CTCATTCTGG ACGAGGCCTG GCTGTTTCTG GATGACCCGG TGTTTGCCGC GCGCATCCGC
CAGTGGCTCA AGACGCTGCG CAAAAAGAAC GTCAGTGTGA TCTTCGCTAC GCAATCGCTG
GCCGACATCC AGAACTCGTC CATCGCCCCG GCCATCGTGG AGAGCTGCGC CAGCCGCATC
TTCCTGCCGA ATCCGCAGGC GACCGAACCA CAGATTCGCA CGATCTACGA AGGCTTTGGT
TTGAACCGTC GCCAGATCGA CATCGTGGCC GAGGCGGTTC CCAAACGCGA CTACTACTAC
CAGTCCCGGC TGGGCAATCG CTTGTTTGAC CTGGACCTGG GGCCGGTCAC GCTGGCCTTT
GCCGGTGCTT CGACACCGCA GGACCAACGC GACATTGATG CGGTATCCCG CTCGGAGTCG
TCTTCCGACT TCGCAGCCGC CTGGCTGCGC CATCGCGGCC TTGACTGGGC CGCCGACCTT
GTTCCGTCCT TTCCATCCAT TCCACAGGAG AACGCACCAT GA
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| Protein sequence | MMNLAEYRKR PALLADWLPW AGLVAPGVVL NKDGSFQRTA RFRGPDLDSA TQGELIATSA
QLNNALRRLG SGWALFVEAE RRAAADYPYS DFPEPLSWLV DEERRASFEE DHSHFESGYH
LTLAYLPAEE SRVRAAKLLY ENTPQRGVDW RERLESFISE TDRFFDLLDG VMPEIVWLDD
SQTLTYLHAT VSARRYRVAV PEHPFYLDAL LADSALVGGL APMLGDQHLR VASVRGFPTS
TWPGLLDDLN RLGFAYRWST RFLCMDKADA ETELGRLRRQ WFAKRKNVVA LLRETIFQQE
SPLVDTDASN KANDADAALQ ELGSDQVAFG YVTATVTVLD PDSSVADEKL RRIERVIQGR
GFVTIPETLN AVEAWLSSIP GNAYANVRQP IISTLNLAHL MPVSAVWAGP ERNNHLDGPP
LIVTRTDGAT PFRLVTHIGD VGHTLVVGPT GMGKSVLLAT LAMQFRRYPG SRIFAFDMGR
SMRATTLGLG GEHYDLGKGW EEGGEIAFQP LARIDQDGYR TWAAEWLEGR LLHEGAAVGP
EEKAMVWSAL GSLAGAPVEQ RTLTGLSVLL QSNALRQALQ PYVLGGAHGK LLDADSDRLG
SGSVQCFEME ELMHSKAAVL AVLGYLFARF DERFDGAPTL LILDEAWLFL DDPVFAARIR
QWLKTLRKKN VSVIFATQSL ADIQNSSIAP AIVESCASRI FLPNPQATEP QIRTIYEGFG
LNRRQIDIVA EAVPKRDYYY QSRLGNRLFD LDLGPVTLAF AGASTPQDQR DIDAVSRSES
SSDFAAAWLR HRGLDWAADL VPSFPSIPQE NAP
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