| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_4197 |
|---|
| Symbol | |
|---|
| ID | 4685220 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008757 |
|---|
| Strand | + |
|---|
| Start bp | 73540 |
|---|
| End bp | 73824 |
|---|
| Gene Length | 285 bp |
|---|
| Protein Length | 94 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 639826057 |
|---|
| Product | putative conjugal transfer TrbD transmembrane protein |
|---|
| Protein accession | YP_973222 |
|---|
| Protein GI | 121582780 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG5268] Type IV secretory pathway, TrbD component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCACCG AGACCGAATT TGCACAGGGC TTCGCCAGTG GTTTCGAGAT TCCGCTGCAT
CGGTCCTTGA CCGAACCGAT CCTGCTGGGC GGCGCGCCGC GCACCGTGGC GATCGCCAAC
GGGACGCTGG CCGCCGCCGT TGGTCTGGGC CTGCAACTGT GGATTCCCGG CCTGGTGCTG
TGGATCGTCG GCCATTCGCT GGCGGTCTGG GGTGCACGGC TCGATCCGCA GTTCATGGCC
GTGTTTTCAC GGCACATCAA ACATCGCCCA CTGCTGGACG TGTAA
|
|---|
| Protein sequence | MSTETEFAQG FASGFEIPLH RSLTEPILLG GAPRTVAIAN GTLAAAVGLG LQLWIPGLVL
WIVGHSLAVW GARLDPQFMA VFSRHIKHRP LLDV
|
|---|
| |