Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnap_4127 |
Symbol | |
ID | 4685258 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polaromonas naphthalenivorans CJ2 |
Kingdom | Bacteria |
Replicon accession | NC_008757 |
Strand | - |
Start bp | 3514 |
End bp | 5871 |
Gene Length | 2358 bp |
Protein Length | 785 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 639825993 |
Product | hypothetical protein |
Protein accession | YP_973158 |
Protein GI | 121582716 |
COG category | |
COG ID | |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.451 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.0546669 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | TTGACATCGC TGCTTTATCA CTCCAACGGC AGCGATGCTA ATTCCTCCCC CTTTGACGAT GCCGTGTTGC AAGTGGCTCA AGGCAGCATC ATCAAGATCG TCAGCCCGTA CATCGGGCTG CGCTACCTGC AACGCATCAT CGAAGCCAGC ATCGGCTGGA CGCTTGTGTC CGACATCGAG GCTTGGCTGT CGTTTTTGTC GAGTTCCGAG CGAGCGCGGA CGCTGCCATT CATACATGCC AATCTGGAAA AAATCCACCA CTGCTCGGCC ATTCATGCCA AAACAGTCAT CTCTCCCACG CTGGCCTACT TGGGATCGGC CAACCTGACC ATCACGGGCA TCCTGAACCG AACCGAAATG GGCGTGCTGC TCGAAGATCC CCGACTGGTT ACGGAACTCA ACGACTGGTT TGATGGCGTC TGGACGCAGA CGGAGCCTCC CGACACTGCC GAGATCACCG AATTTGCCGA TTGGCTTGAC CAGCAGGCAC TAACAGCTGC GGCTGGGCCC CCAAAGAAGT CTTTGTCATC CGCAGGCCAA CGAGTTGCAG CTCGCCTTAC CAACCGTCCC AACCTGGGAG TCGGTCCTGT GGCAATCATC ACCGCGAAGC CGGTCAAGCA GCAGCAGAAG GTGCCCGCGC CGGTGGCTAC TTTTGATATT TACGATCCAG GTGTGGTGAT TTCGCTTGTG GACACGCTGG TGGTCAAGGG TTTTGGGTTT CAAGCTTTTG TGCAGGCAGC ACATCGACAG AGCGTCAGTG TCGCGCAGCG CGATCTTTAC TTCGCATTGC TGTTATTTTG TGCCAACCAC CCGCGTTCCA TCTTCGCAGC AGACACCTTG AACAGACTCC TGTTCATAAA CGGTGTGTTT GTGCAGTCCA CGCCCGAGCA GTTAAAGCTG CAGCAAAAGC CCTATGACGA GTATTTGTCG AGTCTCATCC TGGCGCTGGC CTTCGATGAA GCCAGGCTGC TTCCAAGCAG TGCGCAGTTG CAAAAGGCGA CCGGCTTGCG AGAAGCACGC CAGCGCCTCC TGATCAGCAG CCTGGTCGAG TCTGGATTGC TGCAGCCGCG GAAGGACACC GGAAATTCGC CTGTGCGGTA CGCACTAAAA AGTGATTTCA TATGGTCACG CAGATTTCAG CTTTTTTCCA AAGCCTACAA GAACTGGACG AAATGCCTCA GCCGATCGGC CGCTGACAAC ACAGCCCTGC GCATCAGCGC CGCCAAGGAA TCGGACGATG CCCCTGCTGC AGTCCAACCC ATCGAGTCGT GGCCTTTCGT GATAAACAAG AAAATAGCCG TAAAGCCCGA GTCACCCAGC CATGCAATGG AAAACGATGA TGCACCGGTG CTGGCCGCCG CGCGCAGCGT AAAGCCAGAT CCTGCCAACT TTGCGCCTCC TGAGCCTCAT TCTGAGTCAC TCCAAAGCAA GGCTATTCGA ATAATACGAC CATCCGATCA CACGGCTTTG ATTTGGGCAA TCGAACCAAT ATTTTCATCA GAAGCCGATC GCATCGACGA GTTGTATCTT CACCTTGCAA AAATACTTGA GCCAAGCACA GGCTTTTTTA ACTTCAAAAG CATAAAAGCC TTTGTGATGT ATGTTTACGC TCATTATCGA GAAGATAAAG AATTTATTGA GCAAGTATTA ATTGGGAATA TAAATAAAAC CAGGCTTTTT TATATTACTA TAGGTTTGGA AAAAATGAAC ATATGTTGCA AGGTTGAATT AAACTTAGAT GCAGATATGA ATGAATACCC AAAAACCTAT AAATTCATGA AAAAATCGGC AGAGGTTTTA AAAAGGAATC TTTTAAATAA GAAAAACGGA TTAATTCTCC TTAAATACAA CCGGGGATTC TTTGCAAGAA CGGTCGGCTA CAAGGCACTT GCTCAGTGTG ACCCCCAAAG AAAGTCTGCC GCAATCAAAA GGGAGAATGC ACTCAGAAGA ACTGCACTTG CCAAGGAAGA TGAAGCCAAG CAAAAGACTT TGGCAGAGAG ACAGGCATAT TTAGACGATG GTACCGTCAA GGCCATTAAA GAGGCTTACG CCAGATTAGA CAGAGCAGAT CAAGTTTTTG AATCGCTTCT CTTTCTTGTA CAGCTATACG GAAATCAGCT ACCTCTTGAA ACCGAAATCG AAGTATTTAA AAAAATATCA GATAGAACAA ATATAAGAAT TAAAGAAGTC GAAAGAATAT TTAAAAATGA AACCAATCCA TTTACTTTAT CGATATTAAA AGCAAGTGGT GATGACACTG AGACTTGTTG TTTAATTCAA TTGAACCACT CATACTCTGG AAATTTAGAG GTCCTGCCAA GAACCAAAAA ACTTCTTGAT ATGGCTTCGC TAAATTAA
|
Protein sequence | MTSLLYHSNG SDANSSPFDD AVLQVAQGSI IKIVSPYIGL RYLQRIIEAS IGWTLVSDIE AWLSFLSSSE RARTLPFIHA NLEKIHHCSA IHAKTVISPT LAYLGSANLT ITGILNRTEM GVLLEDPRLV TELNDWFDGV WTQTEPPDTA EITEFADWLD QQALTAAAGP PKKSLSSAGQ RVAARLTNRP NLGVGPVAII TAKPVKQQQK VPAPVATFDI YDPGVVISLV DTLVVKGFGF QAFVQAAHRQ SVSVAQRDLY FALLLFCANH PRSIFAADTL NRLLFINGVF VQSTPEQLKL QQKPYDEYLS SLILALAFDE ARLLPSSAQL QKATGLREAR QRLLISSLVE SGLLQPRKDT GNSPVRYALK SDFIWSRRFQ LFSKAYKNWT KCLSRSAADN TALRISAAKE SDDAPAAVQP IESWPFVINK KIAVKPESPS HAMENDDAPV LAAARSVKPD PANFAPPEPH SESLQSKAIR IIRPSDHTAL IWAIEPIFSS EADRIDELYL HLAKILEPST GFFNFKSIKA FVMYVYAHYR EDKEFIEQVL IGNINKTRLF YITIGLEKMN ICCKVELNLD ADMNEYPKTY KFMKKSAEVL KRNLLNKKNG LILLKYNRGF FARTVGYKAL AQCDPQRKSA AIKRENALRR TALAKEDEAK QKTLAERQAY LDDGTVKAIK EAYARLDRAD QVFESLLFLV QLYGNQLPLE TEIEVFKKIS DRTNIRIKEV ERIFKNETNP FTLSILKASG DDTETCCLIQ LNHSYSGNLE VLPRTKKLLD MASLN
|
| |