Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnap_3989 |
Symbol | |
ID | 4686673 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polaromonas naphthalenivorans CJ2 |
Kingdom | Bacteria |
Replicon accession | NC_008781 |
Strand | - |
Start bp | 4256132 |
End bp | 4256914 |
Gene Length | 783 bp |
Protein Length | 260 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 639837005 |
Product | short-chain dehydrogenase/reductase SDR |
Protein accession | YP_984204 |
Protein GI | 121606875 |
COG category | [I] Lipid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism [R] General function prediction only |
COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.673066 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 0.302564 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCGCTT CCAGCACCCG CCACCCCGCC AGCGACCCAT CCATTGCGGT GGCCCAGGTC GCCATCGTCA CCGGCGCCTC GCGCGGCATC GGCGCGGCCA TTGCCCGGCG CCTGGCGCGC GGCGGTTATG CGGTGGTCGT CAACTACGCC GGCAAGGCCG CCGAAGCCCG CGCCGTCGTG CAGGCCATCG AATCGGCCGG CGGCCAGGCG CTGGCGGTGC AGGCCGACGT GTCGGACGCC GCCGCCGTGC GCGCCCTGTT CGACCAGGCC ATCGAGGCCT TCGGCCGCGT CGATGTGCTG GTCAACAACG CCGGCATCAT GCCGCCAGCG CTGCCGCATC TGGCCGACAC CGACGACGCG ACGTTCGAGC GCCTGTTCGC CGTCAACGTC AGGGGCACCT TCAACACCCT GCGCGAAGCC GCCGCGCGCC TGCAGCACGG CGGGCGCATC GTCAACTTTT CCAGCAGCGT GATCGGCCTG GCACTGCCAG GCTACGCGGT GTACGCCGCC ACCAAGAGCG CGGTCGAAAC CTTCACCCAC ATCATGGCCA AGGAGCTGCG CGGCAAGAAC ATCCGCATCA ATGCGGTCGC GCCCGGCCCG ACCGCCACGG ACCTGTTCCT GAACGGCAAG ACCCCCGAAA CGGTTGAGCG CCTGTCGAAA ATGGCGCCGC TGGAACGCCT GGGCACGCCT GGGGACATCG CCGCTGCGGT CGCTTTTTTG GTCAGCGAAG ACGCCGGCTG GGTCAACGGC CAGACGCTGC GCGCCAATGG CGGGGTGGTT TAA
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Protein sequence | MTASSTRHPA SDPSIAVAQV AIVTGASRGI GAAIARRLAR GGYAVVVNYA GKAAEARAVV QAIESAGGQA LAVQADVSDA AAVRALFDQA IEAFGRVDVL VNNAGIMPPA LPHLADTDDA TFERLFAVNV RGTFNTLREA AARLQHGGRI VNFSSSVIGL ALPGYAVYAA TKSAVETFTH IMAKELRGKN IRINAVAPGP TATDLFLNGK TPETVERLSK MAPLERLGTP GDIAAAVAFL VSEDAGWVNG QTLRANGGVV
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