| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_3945 |
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| Symbol | |
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| ID | 4688615 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas naphthalenivorans CJ2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008781 |
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| Strand | - |
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| Start bp | 4211606 |
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| End bp | 4212106 |
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| Gene Length | 501 bp |
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| Protein Length | 166 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 639836963 |
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| Product | fimbrial protein pilin |
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| Protein accession | YP_984162 |
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| Protein GI | 121606833 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4968] Tfp pilus assembly protein PilE |
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| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.373423 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.00130999 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAGCGTT CCATGCAAAG GGGTTTCACC CTGATCGAAT TGATGATCGT TGTGGCGATT
ATTGGTATTT TGGCTGCCGT GGCTTTGCCT GCGTATCAAG ATTACACCCA GCGTGCTCAA
GCGGGTGAAG CGTTCATTTT GACGGATGGC GCCAAGACGC CGTGGTTGGA TAATCTGGTT
GGCACGACTT GTCCAAACAA TACCGCTGCT GCTGCGGCAG GCACTCCCAA CGCACTGCCA
ATTTCCACGG CCATCACGGG TAAATATGTG GCCAGCGTGC TTTTTGGCGG CACTGCAGTT
ATTTCGGCGG TGGGCGATAT TACCGGTTGT ACGGCACTGA CTACTTTCAA CAGCACCACC
GCCGGTCCTG GTATTGCAGG CAAGGCAATT TACTTTGATG TGGTCGCCAA TAGCGCCACA
GTTAACTTTA ACTGCAGAAC AGCGACGGGT AATGCATTGA CCACTACTCC CGATAAGTTC
TTGCCCAAGA CTTGCAGCTA A
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| Protein sequence | MKRSMQRGFT LIELMIVVAI IGILAAVALP AYQDYTQRAQ AGEAFILTDG AKTPWLDNLV
GTTCPNNTAA AAAGTPNALP ISTAITGKYV ASVLFGGTAV ISAVGDITGC TALTTFNSTT
AGPGIAGKAI YFDVVANSAT VNFNCRTATG NALTTTPDKF LPKTCS
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