Gene Pnap_3806 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnap_3806 
Symbol 
ID4686767 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolaromonas naphthalenivorans CJ2 
KingdomBacteria 
Replicon accessionNC_008781 
Strand
Start bp4058809 
End bp4059732 
Gene Length924 bp 
Protein Length307 aa 
Translation table11 
GC content67% 
IMG OID639836824 
ProductLysR family transcriptional regulator 
Protein accessionYP_984023 
Protein GI121606694 
COG category[K] Transcription 
COG ID[COG0583] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.335856 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCACGCA TTAATTTTGA TTTGCAGCAA CTGCAGGGTT TTGTGGCCGT GGCCGAGCGC 
GGCAGCTTTC GCGCGGCGGC CGAGCACATC AACCTGTCGG CCCCGGCGCT GAGCCGGCGC
ATCGACAAAC TGGAAACCAT CCTGGGCGCG CGCCTGTTCA ACCGCACCAC GCGCGAGGTT
GAACTCACGC CGCTGGGCCG GGTGTTCCTG GAGCGCGCGC GCACCGCGCT GGACGACCTG
GAGTCGGCCA TGCTGGGCAT TGCCGACATC GCCACCCACC GGGGCGGGCG CGTGACGGTG
GCCTGCGTGC CGTCGGCCGC CCTGTACTTT TTACCGAGTG TGATCAGCAG CTTTTCCCGG
AACTACCCCG GCATCCGCGT GCGGGTGGTC GATGAGTCGA TGAACCAGGT GCTGCAAAGC
GTGCTGTCGG GCGATGCTGA CTTTGGCATC GGCTTCATGA ACACCCTGAC GCCCGAGATT
GCCTTCGAGT CCATCCACGA TGATCCGTTT GTGCTGGCCA TGCCGCGCAC ACACCCGCTC
GCCAAACGCA AGACGGTGAA CTGGGCGGAT GTGGAGAAGG AAAGCCTGAT TGCCGTGGCG
CGAAGCAGCG GCAACCGCCA GCTGCTGGAC GATTCGCTGA CCAAGGCCGG CCTGAACCCG
AGCTTTGCGT TCGAAGTGAG CCACGTCGCA ACGCTGCTGG GCATGGTGGA GGCGGGCCTG
GGCCTGGCGG CCGTGCCGCG CATGGCGCTG TCCACCACGC ACGCCACGCT GGTGGGCCTG
CCCCTGCGCC AGCCGCAAAC CGTGCGCAGG GTGGGTCTCT TGAGGCGCCA TGGCGTCAAG
CTCCGGCCGG CGGCCGAGAT GTTTCACCAG CATCTGCGCA CGGCATTGAA GACCCGCAAG
CCCGCCGCTG GCGACCCGGC CTGA
 
Protein sequence
MARINFDLQQ LQGFVAVAER GSFRAAAEHI NLSAPALSRR IDKLETILGA RLFNRTTREV 
ELTPLGRVFL ERARTALDDL ESAMLGIADI ATHRGGRVTV ACVPSAALYF LPSVISSFSR
NYPGIRVRVV DESMNQVLQS VLSGDADFGI GFMNTLTPEI AFESIHDDPF VLAMPRTHPL
AKRKTVNWAD VEKESLIAVA RSSGNRQLLD DSLTKAGLNP SFAFEVSHVA TLLGMVEAGL
GLAAVPRMAL STTHATLVGL PLRQPQTVRR VGLLRRHGVK LRPAAEMFHQ HLRTALKTRK
PAAGDPA