| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_3573 |
|---|
| Symbol | |
|---|
| ID | 4690216 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | + |
|---|
| Start bp | 3796823 |
|---|
| End bp | 3797764 |
|---|
| Gene Length | 942 bp |
|---|
| Protein Length | 313 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 639836586 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_983790 |
|---|
| Protein GI | 121606461 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1131] ABC-type multidrug transport system, ATPase component |
|---|
| TIGRFAM ID | [TIGR01288] ATP-binding ABC transporter family nodulation protein NodI |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCCAGC CCCTTTTTGA AGTCGTTGAC CTGAGCAAGC GCTACGGCGG CAACACCGTC
GTCAACCAGT TGTCGTTTTC CATTGCGCCC GGCGAATGCC TGGGCGTGAT CGGCCCGAAC
GGCGCCGGCA AGACCACCAC CATCCGCATG TGCCTGGGGC TGACCAGCCC CGACTCCGGG
CGCATCACCT ACTTCCCTGG CGGCCAAAGC GCCAGCCTGT CGATGCCGCA GGACGCGCTG
GCCATCAAGG AGCAACTCGG CATCGTCAGC CAGTTCGACA GCCTGGACCC GGATTTCTCG
TGCGCCGAGA ACCTGCTGGT GTTCGGCCGC TATTTCGGCC TGAAGGACAA GGTGATCAAG
GAACGCATCC CCCGACTGCT GGAGTTTGCC GCCCTGACCC ACAAGGCCGA CGCCAAGCTC
AGCGAACTCT CGGGCGGCAT GAAGCGCCGC CTGAGCCTGG CGCGCGCGCT GGTCAACGAC
CCGCAGCTGC TGCTGCTCGA CGAGCCAACC ACCGGCCTGG ACCCGCAGGC GCGGCATTTG
ATGTGGGAGC GGCTGCAGCG GCTGGTGCAG CAGGGCAAAT CGATTTTGCT GACGACGCAC
TTCATGGACG AGGCCGAACG CCTGTGCAAC CGCCTCTTGG TGCTCGACCA CGGCAAGAAG
ATGACTGAAG GCACGCCGCG CGATTTGATC GCGCAGAACC TGGAGCCCGA CGTGGTCGAG
GTGTACGGCG CGGGCGCGCT GGCGCTGGTG GACTCACCGC TCAAGGCCAT GGCCGCGCGC
GTCGAGGTCA GCGGCGAAAC CGTGTTTTTC TACACCAGCG ACGCCAAGCG CCTGCTCGCC
GCGCTGACCG ACTACCCCGA GCTGCGCACG CTGCACCGCC CGGCCAACCT AGAAGACCTG
TTCCTCAAGC TCACCGGGCG CCAGATCAGG GAGGCCGCAT GA
|
|---|
| Protein sequence | MTQPLFEVVD LSKRYGGNTV VNQLSFSIAP GECLGVIGPN GAGKTTTIRM CLGLTSPDSG
RITYFPGGQS ASLSMPQDAL AIKEQLGIVS QFDSLDPDFS CAENLLVFGR YFGLKDKVIK
ERIPRLLEFA ALTHKADAKL SELSGGMKRR LSLARALVND PQLLLLDEPT TGLDPQARHL
MWERLQRLVQ QGKSILLTTH FMDEAERLCN RLLVLDHGKK MTEGTPRDLI AQNLEPDVVE
VYGAGALALV DSPLKAMAAR VEVSGETVFF YTSDAKRLLA ALTDYPELRT LHRPANLEDL
FLKLTGRQIR EAA
|
|---|
| |