| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_3539 |
|---|
| Symbol | |
|---|
| ID | 4690224 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | + |
|---|
| Start bp | 3759311 |
|---|
| End bp | 3760093 |
|---|
| Gene Length | 783 bp |
|---|
| Protein Length | 260 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 639836553 |
|---|
| Product | regulatory protein GntR, HTH |
|---|
| Protein accession | YP_983757 |
|---|
| Protein GI | 121606428 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2186] Transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACACAA GGCTTGCCCT GCCCTCCCAG GTACGCTCCA AGAACCTGTC GCAGCGGGTT
GTGGACGACA TCTCCACCAA GATCAAGGAT GGCGCCTACC GGCCGGGCGA CCGGTTGCCA
CCCGAGCCTG AACTGGTGCA GGCGTTTGGC ATCAGCCGCA CGGTGGTTCG GGAGTCGATG
CTGCGGCTGC AAGCGGCAGG CCTGGTGGAA ACGCGGCATG GCATAGGCAC CTTCGTTCTG
GCGCCTGATC CAGGGCGGGC GCTGCTGTCG GACTCCGGCG CCGACATCAG CAACCACGAC
ATGCTTTGCA TGCTGGAGTT GCGCATCAGC GTTGAAACCG ATGCGGCTGG GTTTGCGGCC
AGCCGGCGCA GCGAGGCGCA TCTGGCCGCC ATGCGCGCGG CCCTTGATGC GTTCGCTGCC
GCCCATCGCA ACGGATGCAG CACGGTAGAG GCTGATTTTC AGTTTCACCT GCAAATCGCG
CTGGCCACTG GCAACCGTTA TTTTGAAGAA GTGCTTCGCA GCCTGGGGGG CGTCACCATC
GAAAGAAACG GCGCCTTGGC CAAGCCAGCC GAGCCCCATG ACGCAGCGTC CGCGAGCAAA
CTCCAATTTG GCAATACCCA CCCCCTGCTG GAGCAAGGCA AGCCGCTTGC GCTGCGTGAA
CACGAGGATG TTTACGAATG CGTGCGCCGC GCCGACCCGG CCGCAGCCCG CGCGGCCATG
TTCATGCACC TGAGCAACAG CCGCGAGCGC AAGCGGCGGG TTATTCAGGC GGCCGGAAAT
TGA
|
|---|
| Protein sequence | MNTRLALPSQ VRSKNLSQRV VDDISTKIKD GAYRPGDRLP PEPELVQAFG ISRTVVRESM
LRLQAAGLVE TRHGIGTFVL APDPGRALLS DSGADISNHD MLCMLELRIS VETDAAGFAA
SRRSEAHLAA MRAALDAFAA AHRNGCSTVE ADFQFHLQIA LATGNRYFEE VLRSLGGVTI
ERNGALAKPA EPHDAASASK LQFGNTHPLL EQGKPLALRE HEDVYECVRR ADPAAARAAM
FMHLSNSRER KRRVIQAAGN
|
|---|
| |