Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnap_3480 |
Symbol | |
ID | 4688555 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polaromonas naphthalenivorans CJ2 |
Kingdom | Bacteria |
Replicon accession | NC_008781 |
Strand | - |
Start bp | 3692830 |
End bp | 3694797 |
Gene Length | 1968 bp |
Protein Length | 655 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 639836494 |
Product | polysaccharide biosynthesis protein CapD |
Protein accession | YP_983698 |
Protein GI | 121606369 |
COG category | [G] Carbohydrate transport and metabolism [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1086] Predicted nucleoside-diphosphate sugar epimerases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.179961 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 0.331186 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTTTTTA CCAGAGTAGT AGCAACGCCT TTGCTGGGCC TGCCTCGTCC CGCCAAGCGA GTGGTGGTCA TCGCGCTGGA TCTGCTCCTG ACGCTGGTTT CAGTGTGGGC CGCTTTTTAC CTGCGCATCG ACCAGACAGG CCTGCCGCAT GCGCAGCAGC CCTATGTTTA CCTGCTCGCG CCCTTGCTGG CGATTCCCGT GTTTGTGCGT TTTGGGCTGT ACCGCGCCAT TTTTCGCTAT ACCGGCATGG CCGCCCTGGC CACCACGGCC AAGGCGGTCG CTGTGTATGC GCTGCTGTTC TTTGTCGCGC TGCTGTATTT CAAGTGGGAC GGCGTGCCGC GCACCCTGGG CCTGATCCAG CCCTTGCTGT TGCTGCTGCT GGTGGGCATC AGCCGATCCA TGGCCAGGTT CTGGCTGGCG GGCTGGTCGA GCAAGGCGCA CCATGCGGCG GGCCGGCTCT TGATTTATGG CGCGGGCGAG GCCGGCGTTG AAACCGCCGC CGCGCTGGCG GTGTCGCGCC AGTTCGTGCT GCTGGGCTTC ATTGACGACG ACAAATCCAA GGCCGGAAGA AGCATCAACG ACGTTGACAT CATGGCGCCT GACGAGGTCG CCGAGGCGGT GGAGAACATG GGCGTGACCG ACATCCTGCT GGCCATGCCG GCGCTGGACC GTGCGCGCCG CAATGAAATC ATCGCCAGCC TGCGGGAGTT GCCGGTCCAC GTCCGTACCT TGCCCGGCAT GGTGAACCTG GCGTCGGGGC GGGTCACGAT CCAGGATTTC CAGGAACTCG ACGTTGAAGA CCTCTTGGGG CGCCCGCCGG TGCCGCCCGA CTCGACCTTG CTGGCGCGCA ACCTGGCGGG CAAGGTGGTG CTGGTCACCG GGGCCGGCGG CAGTATCGGC AGTGAACTGT GCCGCCAGAT CCTGCTGGAA AAGCCGCGCC AGCTGGTGCT GGTCGAACTC AGCGAGTTTG CCCTGTACAC CATTCACCAC GAGCTGGAGG GCTTGTGCAG CGAACATAAC TTGCCCATGG AAGTGATTCC CCTGCTGGGC AGCGTCGGAA ATTTTGGCCG CCTCAAAGAG ATTTTCAATC TCTACCGGCC AGCCACGGTG TACCACGCAG CGGCTTACAA GCATGTGCCG CTGGTCGAGA GCAACCCGTC CGAAGGCGTG TTCAACAACG TCTTCGGCAC CCTGAACACG GCCCGGGCCG CCATGGAAAG CGGCACGTCG CATTTTGTGC TGGTGTCCAC CGACAAGGCG GTTCGCCCCA CCAATGTCAT GGGCGCGACC AAGCGCATGG CCGAGCTGGT GCTGCAGGCA CTGGCGGCCA GCCCGTCGCT GCGCTTCGTT TCCCCGGACG GCTCCTACAG CGCCGAAGTC CAGAACCGCA CCGTGTTTGC CATGGTGCGC TTTGGCAACG TGCTGGGCAG CAGCGGCAGC GTGGTGCCGC TGTTTCGCAA GCAGCTGCGC GACGGCGGCC CGCTGACGGT CACGCATCCG GAAGTCACCC GCTATTTCAT GACGATTCCC GAGGCGGCCC AACTGGTGCT GCAAGCCGGC GCCATGGCCC ATGGCGGCGA CGTCTTTGTG CTGGACATGG GCAGCCCGCT GAAGATCGTC GATCTGGCCA GGCGCATGGC GCAACTGTCC GGCCTGAGCC TGCGCGATGA AAACAACCCC GACGGCGATA TTGAAATCAG GATCACCGGC CTTCGCCCCG GCGAAAAGCT TTACGAGGAA CTGCTGATTG GCGACAACCC CGAGCCGACT GCGCATCAGC GCATCATGAA GGCGCATGAG GATTTCGTGG CCTGGCCCGA ACTGGCGCCG ATACTGGCGG AAATCCGCCA GGCCGCCACC GTCAACAACG AGGCCGTCAT GAAATCCATC ATGAAGCGGC TGGTGCATGG CTACATTCCG CATACCGCCT GCCCGGCAAA AATTCCCGCG CAGGCTCGCG CGGAGTAA
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Protein sequence | MFFTRVVATP LLGLPRPAKR VVVIALDLLL TLVSVWAAFY LRIDQTGLPH AQQPYVYLLA PLLAIPVFVR FGLYRAIFRY TGMAALATTA KAVAVYALLF FVALLYFKWD GVPRTLGLIQ PLLLLLLVGI SRSMARFWLA GWSSKAHHAA GRLLIYGAGE AGVETAAALA VSRQFVLLGF IDDDKSKAGR SINDVDIMAP DEVAEAVENM GVTDILLAMP ALDRARRNEI IASLRELPVH VRTLPGMVNL ASGRVTIQDF QELDVEDLLG RPPVPPDSTL LARNLAGKVV LVTGAGGSIG SELCRQILLE KPRQLVLVEL SEFALYTIHH ELEGLCSEHN LPMEVIPLLG SVGNFGRLKE IFNLYRPATV YHAAAYKHVP LVESNPSEGV FNNVFGTLNT ARAAMESGTS HFVLVSTDKA VRPTNVMGAT KRMAELVLQA LAASPSLRFV SPDGSYSAEV QNRTVFAMVR FGNVLGSSGS VVPLFRKQLR DGGPLTVTHP EVTRYFMTIP EAAQLVLQAG AMAHGGDVFV LDMGSPLKIV DLARRMAQLS GLSLRDENNP DGDIEIRITG LRPGEKLYEE LLIGDNPEPT AHQRIMKAHE DFVAWPELAP ILAEIRQAAT VNNEAVMKSI MKRLVHGYIP HTACPAKIPA QARAE
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