Gene Pnap_3339 details

Gene Information

• Locus tag: Pnap_3339
• Symbol: radC
• ID: 4689149
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Polaromonas naphthalenivorans CJ2
• Kingdom: Bacteria
• Replicon accession: NC_008781
• Strand: +
• Start bp: 3536089
• End bp: 3536763
• Gene Length: 675 bp
• Protein Length: 224 aa
• Translation table: 11
• GC content: 68%
• IMG OID: 639836352
• Product: DNA repair protein RadC
• Protein accession: YP_983557
• Protein GI: 121606228
• COG category: [L] Replication, recombination and repair
• COG ID: [COG2003] DNA repair proteins
• TIGRFAM ID: [TIGR00608] DNA repair protein radc

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.0155907
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 30
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGCTCATCA AAGACCTGCC CGCAGACGCC CGTCCGCGCG AGAAACTGCT GGCCCGTGGC 
CCTGCGGCGC TCAGCGATGC CGAATTGCTG GCGCTGCTGC TGCGCACCGG CCTGCCCGGC 
AAGAATGCGC TGCAGATGGG CCAGGAACTG CTCGATAACT TTGGCGGCGT GGCCGGGCTG 
CTGCACACCG GAGCCGAAGC GCTCAAATCC ATCAAGGGAC TCGGCCCTGC CAAGCGCGCC 
GAAATCGTCG CCGTGCTGGA ACTGGCGCGC CGCGCCCTGG CCGAGGAGCT GAAGGAAAAG 
GCGCTGTTCA CCACGCCGCA AGCGGTGCGC GACTACCTGC AGCTGCAGCT GGGCAGCCGG 
CCGCACGAGA TTTTTGCCGT GCTGTTCCTG GACAGCCAGC ACCGGCTGAT CGCGCTGGAG 
GAGCTGTTTC GCGGCACGCT GACGCAGACC AGCGTGTACC CGCGCGAGGT GGTGATCCGG 
GCGCTGGCGC TGAATGCGGC CAGCGTGGTG CTGGCGCACA ACCACCCGAG CGGCGCGGCG 
CAGCCCTCGC GCGCCGACGA AATGCTGACC CAGACCCTGA AAACCGCACT GGCGCTGGTC 
GATGTGCGGG TGCTCGACCA TTTCGTGGTG ACCGCCTCCC TGGCGGTGTC GATGGCCGAG 
ATGGGACTGG TTTAG 

 

Protein sequence

MLIKDLPADA RPREKLLARG PAALSDAELL ALLLRTGLPG KNALQMGQEL LDNFGGVAGL 
LHTGAEALKS IKGLGPAKRA EIVAVLELAR RALAEELKEK ALFTTPQAVR DYLQLQLGSR 
PHEIFAVLFL DSQHRLIALE ELFRGTLTQT SVYPREVVIR ALALNAASVV LAHNHPSGAA 
QPSRADEMLT QTLKTALALV DVRVLDHFVV TASLAVSMAE MGLV