Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnap_3337 |
Symbol | ispH |
ID | 4689151 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polaromonas naphthalenivorans CJ2 |
Kingdom | Bacteria |
Replicon accession | NC_008781 |
Strand | - |
Start bp | 3534390 |
End bp | 3535385 |
Gene Length | 996 bp |
Protein Length | 331 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 639836350 |
Product | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase |
Protein accession | YP_983555 |
Protein GI | 121606226 |
COG category | [I] Lipid transport and metabolism [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0761] Penicillin tolerance protein |
TIGRFAM ID | [TIGR00216] (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.064022 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 31 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGTCGAATC CACCCCTTGA AGAAATCCTG CTGGCCGAGC CGCGCGGCTT TTGCGCTGGC GTTGACCGGG CGATTGAAAT CGTCGAGCGG GCGCTGGTCA AGTTTGGCGC ACCGATTTAT GTGCGCCATG AAATCGTTCA CAACACCTAT GTGGTCAATG ACCTGAAGGT CAAGGGCGCG ATTTTCATTG AGGAATTGTC CGACGTGCCA GCAGGCGCCA CCCTGGTGTT CAGCGCCCAC GGCGTCAGCC GGGCGGTGCA GGAAGAAGCC CGGGCGCGGG GTTTCCAGAT TTTCGATGCC ACCTGCCCGC TGGTGACCAA GGTGCATGTC GAGGTCGCCA AGCTCAACAA GGAAGGCTAC GAGTTCATCA TGATCGGCCA CAAGGGCCAC CCCGAAGTCG AAGGCACCAT GGGCCAGCTC GACAGCGGCA TCCATCTGGT CGAGGACGTG GCCGACGTGG CGCGCATCTC GCCGCTGCAA ACCGAGCGCC TGGCCGTCGT CACGCAAACC ACGCTGAGCG TGGACGACGC GGCCGAGATC AGCGCGGCCA TCGTGGCCCG GTTTCCGCAG GTGCGCAAGC CCAAGCAGCA GGACATCTGC TACGCCACGC AAAACCGGCA GGACGCCGTC AAGGTGCTCA GCCCGCAGGT CGATATCCTG ATCGTGGTCG GCAGCCCGAC CAGCTCGAAC AGCAACCGCC TGCGCGAACT GGCCGCCAAG CTGGGCACCG AGGCCTACAT GGTCGATGAC GCCAGCGAAC TGCAGGAAGC CTGGTTCGAC GGCAAGAGCC GTGTCGGCCT GACGGCGGGC GCGTCGGCCC CCGAGGTGCT GGTCAGGCAG GTCATCGACC GCATCAAGGC GCTGGGCGCG GTGTCAGTCC GCAAGATGGA CGGAGTCGAG GAAACCATCA AGTTCCCCTT GCCCAAGGGC CTGAAGCTGG ACGCGCAGGG CCAGCAGCTT GAAGTCAACG GCAGCCAGCT TCACCAACTG GGCTGA
|
Protein sequence | MSNPPLEEIL LAEPRGFCAG VDRAIEIVER ALVKFGAPIY VRHEIVHNTY VVNDLKVKGA IFIEELSDVP AGATLVFSAH GVSRAVQEEA RARGFQIFDA TCPLVTKVHV EVAKLNKEGY EFIMIGHKGH PEVEGTMGQL DSGIHLVEDV ADVARISPLQ TERLAVVTQT TLSVDDAAEI SAAIVARFPQ VRKPKQQDIC YATQNRQDAV KVLSPQVDIL IVVGSPTSSN SNRLRELAAK LGTEAYMVDD ASELQEAWFD GKSRVGLTAG ASAPEVLVRQ VIDRIKALGA VSVRKMDGVE ETIKFPLPKG LKLDAQGQQL EVNGSQLHQL G
|
| |