| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_3209 |
|---|
| Symbol | |
|---|
| ID | 4688281 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | - |
|---|
| Start bp | 3409037 |
|---|
| End bp | 3410335 |
|---|
| Gene Length | 1299 bp |
|---|
| Protein Length | 432 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 639836222 |
|---|
| Product | recombination factor protein RarA |
|---|
| Protein accession | YP_983428 |
|---|
| Protein GI | 121606099 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG2256] ATPase related to the helicase subunit of the Holliday junction resolvase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.411759 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCAAGC CCGCTTCTCA CCCACCTCTG GCCGAGCGGC TGCGTCCCAA AAATCTTGGC
GAAGTCATCG GCCAGCAGCA TTTGCTCGGC GAAGGCCTGC CGCTGCGCAT CGCGTTCGAG
TCGGGCGAGC CGCACAGTTG CATCCTGTGG GGGCCGCCCG GCGTGGGCAA GACCACCATC
GCCCGGCTGA TGGCCAGCAG TTTCGATGCG CATTTCATCA CCATTTCGGC CGTGCTCGGC
GGCGTCAAGG ACATCCGCGA AGCGGTCGAG CAGGCGACCA TCTGGCAAGG GCAGGGCGGC
CGGCGCACCA TCGTGTTTGT CGATGAAGTG CACCGCTTCA ACAAAAGTCA GCAGGATGCT
TTCCTGCCGC ATGTCGAAAG CGGCCTGTTC ACCTTCATTG GCGCCACCAC CGAAAACCCG
TCGTTCGAGG TGAACTCGGC CCTGCTGTCG CGCGCCGTGG TGTACGTGCT GCAGCCGCTG
ACGGAGGATG ATCTTAAGCA AATAATAGCC AGAGTCCTTT CTGAACGGGC GCTGCCAGCT
ATTGAAACAA TAGCAGTTGA AGCCGTTGAC CGGCTCGTTG CTTATGCCGA CGGCGATGCC
CGGCGCCTGC TCAACACGCT CGAATCGCTC AGCGTCGCGG CCAGGGCCGA AAAAATCACC
GGCGTGACCG ATGCCTGGCT GCTCAAGGTG CTGGGCGAGC GCCTGCGCCG CTACGACAAG
GGCGGGGAGA AGTTTTACGA CACCATTTCG GCGCTGCACA AGTCGGTGCG CGGCTCCGAC
CCCAACGCCG CACTCTACTG GTTCATGCGC ATGCTCGATG GCGGGGCCGA GCCGCGCTAC
ATGGCGCGCC GCCTGATCCG CATGGCCAGC GAGGACATCG GGCTGGCCGA CCCGCGCGCG
TTGCGCCTGG CGCTCGACGC GGCCGAGGTC TATGAACGCC TGGGCTCACC CGAGGGCGAG
CTGGCGCTGG CGCAATGCGT GGTGTACCTG GCCGTCGCGC CCAAGTCGAA CGCGGTGTAC
CAGGCCTTCA ACGAAGCCAA GGCCTTCATC AAGAAGGATG GCACCCGTCC GGTGCCGCTG
CATTTGCGCA ATGCACCAAC AAAGCTCATG AAAGAACTCG ACTACGGCAA GAACTACCGC
TATGCGCATG ACGAGGACGG CGGGTTTGCG GCCGGAGAGA ATTATTTTCC CGAAGGCATG
GTCGATCCGG GCTTTTACCG TCCGGTCAAC CGGGGTCTGG AGATCAAGAT TGCCGATAAG
TTGAATGAGT TGAAGGCAAA AAACCATCAG AAAAACTGA
|
|---|
| Protein sequence | MAKPASHPPL AERLRPKNLG EVIGQQHLLG EGLPLRIAFE SGEPHSCILW GPPGVGKTTI
ARLMASSFDA HFITISAVLG GVKDIREAVE QATIWQGQGG RRTIVFVDEV HRFNKSQQDA
FLPHVESGLF TFIGATTENP SFEVNSALLS RAVVYVLQPL TEDDLKQIIA RVLSERALPA
IETIAVEAVD RLVAYADGDA RRLLNTLESL SVAARAEKIT GVTDAWLLKV LGERLRRYDK
GGEKFYDTIS ALHKSVRGSD PNAALYWFMR MLDGGAEPRY MARRLIRMAS EDIGLADPRA
LRLALDAAEV YERLGSPEGE LALAQCVVYL AVAPKSNAVY QAFNEAKAFI KKDGTRPVPL
HLRNAPTKLM KELDYGKNYR YAHDEDGGFA AGENYFPEGM VDPGFYRPVN RGLEIKIADK
LNELKAKNHQ KN
|
|---|
| |