| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_3191 |
|---|
| Symbol | |
|---|
| ID | 4686620 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | - |
|---|
| Start bp | 3389657 |
|---|
| End bp | 3390631 |
|---|
| Gene Length | 975 bp |
|---|
| Protein Length | 324 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 639836204 |
|---|
| Product | NAD-dependent epimerase/dehydratase |
|---|
| Protein accession | YP_983410 |
|---|
| Protein GI | 121606081 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0451] Nucleoside-diphosphate-sugar epimerases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.26933 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.010449 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAAACA TATCACCCAA GATTTACGTC GCTGGCCACC GGGGCATGGT GGGCTCCGCC
ATCGTTCGTC AACTGCTGGC AGCAGGTCAC GCGCCTGAGA ACATCATCAC CCGCACCCAT
GCTGAGCTAA GCCTCACCGA GCAGTCTGCC GTGCGCGACT TCTTTCAGGC TGAAAAGCCC
GACCAGGTGT ATCTGGCCGC CGCCAAGGTA GGCGGCATTC ATGCCAACAA CACCTATCCG
GCCGAATTCA TCTACCAAAA CCTGATGATG CAGGCCAACG TGATTGATGC CGCCTTTCAA
AGTGGCGTTA AAAAGCTGCT GTTCCTGGGT TCCAGCTGTA TTTACCCCCG GCAGGCCCCG
CAGCCCATGG CTGAAAATGC ATTGCTGACC GGCCCGCTGG AGCCCACCAA CGAGCCCTAT
GCGATTGCCA AGATTGCCGG CATCAAACTC TGCGAAAGTT TTAACCGCCA ATACGGCGCC
AGCCACGGCA TTGATTACCG AAGCGTCATG CCCACCAATC TGTATGGTCT GGGTGACAAC
TACCACCCTG AAAACAGCCA CGTCATTCCC GCACTGATTC GCCGCTTTCA TGAAGCCAAG
GCCAGCCATG CGCCCAAAGT CACCATCTGG GGCACCGGCA CCCCATGCCG TGAGTTCTTG
TATGTGGACG ACATGGCCGC TGCCAGCATC CACGTCATGA ACCTGGAAAA GGCCACTTAT
GACCTGCACA CCAGTCCGAT GCAAAGCCAT ATCAATGTCG GCTACGGCAG CGACATCACC
ATTGCTGAAT TGGCGCAAAC CGTGGGCCAG GTCGTGGGCT ACCAGGGTGA CATCGACTTT
GACAGCACCA AACCCGACGG CGCACCCCGC AAGCTCATGG ACAGCAGCCG CCTTGAATCC
CTGGGCTGGC AGGCGCAAGT GAATCTGAAG GACGGCTTGA AACTTGCATA TCAAGATTTC
ATGACGCACT CATAA
|
|---|
| Protein sequence | MTNISPKIYV AGHRGMVGSA IVRQLLAAGH APENIITRTH AELSLTEQSA VRDFFQAEKP
DQVYLAAAKV GGIHANNTYP AEFIYQNLMM QANVIDAAFQ SGVKKLLFLG SSCIYPRQAP
QPMAENALLT GPLEPTNEPY AIAKIAGIKL CESFNRQYGA SHGIDYRSVM PTNLYGLGDN
YHPENSHVIP ALIRRFHEAK ASHAPKVTIW GTGTPCREFL YVDDMAAASI HVMNLEKATY
DLHTSPMQSH INVGYGSDIT IAELAQTVGQ VVGYQGDIDF DSTKPDGAPR KLMDSSRLES
LGWQAQVNLK DGLKLAYQDF MTHS
|
|---|
| |