| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_2875 |
|---|
| Symbol | |
|---|
| ID | 4686731 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | - |
|---|
| Start bp | 3018244 |
|---|
| End bp | 3022029 |
|---|
| Gene Length | 3786 bp |
|---|
| Protein Length | 1261 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 639835881 |
|---|
| Product | multi-sensor hybrid histidine kinase |
|---|
| Protein accession | YP_983095 |
|---|
| Protein GI | 121605766 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
[COG2205] Osmosensitive K+ channel histidine kinase |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.948484 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGATC CCTGCCAGCA AACAGAGGCT TTGCACGCGG GCCTGGTGCC GCTGGATGCG
GTTTTGTGTA CCGGGGAGCT GGCACGGCGT CCGGCTCGAC CGCCCGATTA CGAGACTGAA
AACCGCGCGC TGGCGGTGCT GGTCCAGGCG CTGGCTGACT CGCCGCGCAC CATTCTCCAG
GCACTGGCCG ACACCATTCT GGAGGTCTTC CAGGTGGGCT CGGCGGGCAT CAGCCTGCTG
GCAAGTGACG AAAAGCGCTT CGTCTGGCCT GCGATTGCCG GCGCCTGGCA GGGCTATGCC
GGCGGCGGCA CGCCGCGCGA TTTCAGCCCG TGTGGCGACG TGCTCGACCA CAACGCGCCG
CTGCTGTTCA AACGCTTCGA ACGGCGCTAC GCCTATTTGC GGGACGCAAC GCATCAGGCC
GAAGAATGCC TGCTGCTTCC TTTTTACGTG AAAGGCAAAG CGGTCGGCAC GATCTGGGCG
GTGGCCCACG ATGCGCGCCG GCAGTTCGAC ACCGAGGATC TGCGCCAGCT GGCAAGCCTT
GGCCGGTTTG CCTCGGCGGC CTACCAGGCG ACGATGTTGC TCGATACGGC GCTTGAGCAG
GGCCAGGTCG CGCAGGGCCT GATGGACGAG GCGGTCCAGG CGCGTCTGGC CATGGGTAAG
CTGCGCGAGA GTGAAGAGCA CTATCGCATG TGCTTTGAAT CCATCGAGGA AGGCTTTTGC
ATCATCGAGA AGCTCGAAGG CGAAACGCTG GATTTTCGCT ACGTTGAAGC CAATGCGGCT
TTCGCTGCGC AAACCAGTTT GCGCGATGTG GTCGGAAAGA CCCTCAGGCA GGTGTTGCCG
GACGAATTCG AGGAACGGCT TGCCATTTAT GACACCGTTA CCCGAACCGG CCAGCCGATA
AAGATTCAAC GTCGATTCGG CAGCCAAGGG CGTGTGCTGG AGCTTTACGC CTTTCGGGTC
GAAGACGACA TGCACAGGCG CGTAGCCATC AACTTCCAGG ACATCACCGA GCGTAAAAGT
GCCGAGGAGA AGCTGGCCCG GCAGGCTGCG GAACTGGCTA CCTTGTATGC CACCGCCCCG
GTGGGCTTGT TCATGCTCGA CACCGACCTG CGCTATGTGC GGATCAACCA GGCCATGGCC
GACCTCAACG GCCTTTCTGC AGAGCGGCAT ATCGGCCGGA CGCTGCGCGA ATTGTTGACG
GCTGGCCTGG CCGACGCCGT TGAACCCCTG CTGCGCCAGG TTCTCGAAAC CGGCAGGCCG
GAGCTGAACC GCGAGGTGCA TGGGGCCACC TTGCCCCGAT CCGGCGAGCA GCGCCACTGG
CTGGTGAGTT ACCACCCGGT GCAGGCCGGG GATGGAACGA TCACAGGGGT GCATGGCGTG
GTGCAGGAAA TCACCGAGCG CAAGCAGGCG GAAGATGCCT TGCGCGAATC GCAGCGGTTT
TTGCATTCAA CCCTCAATGC CTTGTCGGGC CACATCGCCG TACTGGATGA ATTCGGAACG
ATCCTGGAAA TCAACGAGGC ATGGAGCCGG TTCGCCCTTG AGAATCAAAC GGCAGGTGTG
AATGCCAGCG TCGGTGTCGG CGTTAACTAT CTTCAGCATT GCGAACATTG CGAACATAAG
TCTTTCCAAT GTGGTGATAC GTCGGCTTAT GCCGAGGCCA TTAAGGATGT CATTGCCGGA
CGGCGAACGC GGTTTGAGAT GGAATATGCC TGCCATTCGC CAACGCAGCA GCGCTGGTTC
GTCATGCGGG TCACCCGCTT CCAGAGTCCC GGGCCGGTGC GGATCGTCAT CGTTCACGAT
GACTGCACGG AACGAAAGCT GGCCGAAAAC GCGTCTCGCG ACACCGAAGA ACGCTATCGC
AATTTGTTCA ACTCCATGGA TGAAGGCTTT TGCCTCATCG AAATGATCTT CGATGGCCAG
CAAAAGCCGG TTGATTACCG TTTCCTGGAA GTCAATCCTG CTTTTGAAAC GCAGACGGGA
ATACGCAACG TGACGGGAAA ACGGGTGCGC GAAATAATGC CTGATCTTGA AGCGTACTGG
TTTGAAATTT ACGGCAAGGT CGCGCTGACG GGCGAATCAC TGCGCTTTAT CAACGAAGTC
AAGGCGCTGG ACCAGTGGTG GGATGTGCAT GCGACCCGGC TGGGTGGACC GGAAAACCGG
CAAGTCGCCA TCATTTTCGA CAATGTCACC CAGCGAATGA AGGCCGACGA AGCCTTGCGC
CAGAGCGAAG CGCGTTTTCG CTTGTTGTTT GACCGGGGGC CGGTCGCCAT CTATTCGTGC
GATACCTCGG GAATGATCAA GGAATTCAAC CCCTGCGCCG TGAAACTATG GGGACGCGAA
CCGACACCGG ACGATATTGA CGAGCGGTTC TGCGGCTCAT CCAGGGTGTA TTGCCTCGAC
GGCACGCTAC TCACCCCCGA GCAAAACCCG GTGATTGCGG TGCTGAAGGG TGAAATGCTC
CAGGCGCATG ACGTGGAAGC CTTGATCGAG CGGCCCGATG GCTCGCGAAT CCATGTGATT
GCCAATATTG TTCCTCTCAG AAACAGCTGG GGCGAAATCA CCGGCGCCAT CAACTGCTTT
TACGACATCA CCGAGCGCAG CCGCCTGGAG CAAAAGACGC AGGAGCAGGC GCAAGCCCTG
GCCGAGCTGC ACCAGCGCAA GGATGAGTTC CTGGCGATGC TCAGCCATGA ATTGCGCAAC
CCGCTCGCGC CCCTGGCCAG CGCCGTGCAA TTGCTGCAGC GCCAGAAGAA CGAAGCGCCG
CAGCAGCAGG CCCTGAGCAT CATCGAGCGC CAGACCGGGC AACTCAAGCA CCTGGTGGAT
GACCTGATGG AAATCTCCCG CATTACCAGC GGCAGTGTCC GGCTTCGCCA GGAGCGGGTC
AGCCTGGGCG ATGTCGTGGA ACGGGCGCTG GAAACCACCC GGCCGCTGAT GCTGCAACGC
CGCCATGAAC TCGCGGTGTC GCTGCCGCCA GAGCCGCTCT GGCTGCATGC CGACGCCACC
CGGCTGGAGC AGGTGCTGGT GAACCTGCTC ACCAACGCCG CCAAGTACAC CGACAAGGGC
GGGCGCATCT GGCTGAGCGC CGGGCAGGAG GAGGCCGCCG GGACAGGTGC GGCGGTGGTC
CGGGTGCGCG ATACCGGCAT CGGCATCGCG CCTGAACTGT TGCCGCGCAT CTTCGATTTG
TTCACGCAGG CAGAGCGCTC GATTGACCGA TCGCAAGGCG GTCTGGGCAT CGGCCTGTGC
CTGGTGCGGC GGCTGCTGGA ATTGCACGGC GGAACCGTGG ATGTGCGCAG CGTCCTGGGG
CAAGGCAGCG AATTCGTCGT GCGCCTGCCG GTCATGCCGG CTGACATGCC GCAGCCGTCC
GTGCCGCCGC CTTCCGTCAA ACCGGCCCAG CCACCGGGCA ATGGCTGCCG GGTGCTGGCT
GTCGATGACA ACGTGGACGC GGTCCAAAGC CTGGCGATGC TGCTGAAGAT GTCCGGGCAT
GTGGTTGAAA TTGCCTACGA CGGCCCGAGC GCCCTGACCA TGGCCCTGGC CATGCGGCCC
GACGTCATGC TGCTGGACAT CGGCTTGCCG GGACTCACCG GCTACGAGGT GGCCGAGCAG
GTTCGCCAGC AACCTGCGCT CAAGAGTGTC GTGCTGGTCG CCCTGACGGG GTATGGACGC
GCGGCGGACC GGCAGTTCTC GAAAGACGCG GGGTTTGACT ACCATCTGGT CAAGCCCGCC
GAATTTCGCG AGGTCGAGAA AATCCTGTCG GTCGTCGCCG GGCAGGCCGC CTGGCCGGGC
CGATAA
|
|---|
| Protein sequence | MTDPCQQTEA LHAGLVPLDA VLCTGELARR PARPPDYETE NRALAVLVQA LADSPRTILQ
ALADTILEVF QVGSAGISLL ASDEKRFVWP AIAGAWQGYA GGGTPRDFSP CGDVLDHNAP
LLFKRFERRY AYLRDATHQA EECLLLPFYV KGKAVGTIWA VAHDARRQFD TEDLRQLASL
GRFASAAYQA TMLLDTALEQ GQVAQGLMDE AVQARLAMGK LRESEEHYRM CFESIEEGFC
IIEKLEGETL DFRYVEANAA FAAQTSLRDV VGKTLRQVLP DEFEERLAIY DTVTRTGQPI
KIQRRFGSQG RVLELYAFRV EDDMHRRVAI NFQDITERKS AEEKLARQAA ELATLYATAP
VGLFMLDTDL RYVRINQAMA DLNGLSAERH IGRTLRELLT AGLADAVEPL LRQVLETGRP
ELNREVHGAT LPRSGEQRHW LVSYHPVQAG DGTITGVHGV VQEITERKQA EDALRESQRF
LHSTLNALSG HIAVLDEFGT ILEINEAWSR FALENQTAGV NASVGVGVNY LQHCEHCEHK
SFQCGDTSAY AEAIKDVIAG RRTRFEMEYA CHSPTQQRWF VMRVTRFQSP GPVRIVIVHD
DCTERKLAEN ASRDTEERYR NLFNSMDEGF CLIEMIFDGQ QKPVDYRFLE VNPAFETQTG
IRNVTGKRVR EIMPDLEAYW FEIYGKVALT GESLRFINEV KALDQWWDVH ATRLGGPENR
QVAIIFDNVT QRMKADEALR QSEARFRLLF DRGPVAIYSC DTSGMIKEFN PCAVKLWGRE
PTPDDIDERF CGSSRVYCLD GTLLTPEQNP VIAVLKGEML QAHDVEALIE RPDGSRIHVI
ANIVPLRNSW GEITGAINCF YDITERSRLE QKTQEQAQAL AELHQRKDEF LAMLSHELRN
PLAPLASAVQ LLQRQKNEAP QQQALSIIER QTGQLKHLVD DLMEISRITS GSVRLRQERV
SLGDVVERAL ETTRPLMLQR RHELAVSLPP EPLWLHADAT RLEQVLVNLL TNAAKYTDKG
GRIWLSAGQE EAAGTGAAVV RVRDTGIGIA PELLPRIFDL FTQAERSIDR SQGGLGIGLC
LVRRLLELHG GTVDVRSVLG QGSEFVVRLP VMPADMPQPS VPPPSVKPAQ PPGNGCRVLA
VDDNVDAVQS LAMLLKMSGH VVEIAYDGPS ALTMALAMRP DVMLLDIGLP GLTGYEVAEQ
VRQQPALKSV VLVALTGYGR AADRQFSKDA GFDYHLVKPA EFREVEKILS VVAGQAAWPG
R
|
|---|
| |