| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_2820 |
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| Symbol | |
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| ID | 4686865 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas naphthalenivorans CJ2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008781 |
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| Strand | - |
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| Start bp | 2962333 |
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| End bp | 2963691 |
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| Gene Length | 1359 bp |
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| Protein Length | 452 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 639835828 |
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| Product | sigma-54 dependent trancsriptional regulator |
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| Protein accession | YP_983043 |
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| Protein GI | 121605714 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.287176 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.0000171057 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | GTGAAGCCAT TACCCGAATT GATGTCCTAC CTGGAGGGCT TGAGCGAGCC GCATATCCTG
TTCGACACCC AATACCGCAT CCTGGCGGCC AACGCGGCTT ACCGGCAGCA GTTCAGCCCG
GTGCAAAGCG TGGTGGGGCG CACCTGCTAT GAGGTGTCGC ACCACTTCAA CGTGCCGTGT
GACCAGGCCG GCGAGTCATG CCCACTGGCC CAATCGCGCG CGTCGGGGCA GCGTGAGCGG
GTGCTGCACC TGCACCACAC GCCCAAGGGT GAGGAGTACG TCAACATCGA GCTGGCCCCG
CTGCTGGACG CCCATGGCGA ACAGGCTTTT TTCGTCGAGA AGATGGAGCG TCTGCGGGTG
GCACAGGGTC AGCCGGCAGC CCAGGGCCTG ATTGGGCGGG CGCCTGCCTT TCAGCACATG
CTGGCGCTCG TGGCGCGCGT TGCGCCCTCG CAGGCCACTG TGCTGCTGCT GGGAGAGTCC
GGTACCGGCA AGGAACTGGT CGCCCAGGCG ATCCACGAGG CCAGCCCGCG CGCGCAGCGT
GCGCTGGTGG CGGTGGATTG CTCAAGCTTG CCGGAAAACC TGTTTGAGTC CGAGTTGTTT
GGCCACGAGC GGGGCGCTTT CACCGGTGCC AGCACCGCCC GGGGCGGTCT GATCGAGGCG
GCCAGTGGCG GCACCCTGTT CCTGGACGAG GTGGGCGATA TTCCACTCAT CATGCAAGTC
AAGCTGCTGC GTTTGCTGGA AACCGGCACC TACCGCCGCG TGGGCAGCAC TGAGCTGCGC
CATGCCGACA TCCGCGTGGT TTCGGCCACC CATCGCGACC TGGACCGCAT GGTGTCCCAG
GAGCTGTTTC GTGAAGACCT GTACTACCGC CTGAGCACGT TTCCGATTCA CCTGCCCGCC
TTGCGCGAAC GAAGGGACGA CATCGTCCTG CTGGCAGCCG CCTTGCTGGA GCGCGTGGCC
CCTCAGCGCA AGCTGCGCAT CAGCGAGCCC GCACTGCGCT TGCTGCAGGC GCAGGATTAC
CCGGGCAATG TCAGGGAACT GCGAAACCTG CTGGAACGTG CGGCGCTGCT GTGCGATGGC
AATACGGTCG AAGCCAGCCA TATCCAGCAG GCCCTGTCGT CGGGAAGACG CCCGTCGGCC
GGGCCGCGTG TCCATCCGCA AGCTTGCGAT GCCGGCATCA CCGACACTGC CGTCAGCAGC
CTGAAGGGCT TGACCCTGGC GCCAGGCGCT CTTAGAACCA TCGAACGCGC TGCGCTGCAG
CAATTGGTCA GCGGCCACCG GGGAAGCCGG GCGGATTTGG CGAATAAGCT GGGCATCAGC
GAACGCTCCC TTTACCGCAA ACTCAAGGCG CTGGAATAA
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| Protein sequence | MKPLPELMSY LEGLSEPHIL FDTQYRILAA NAAYRQQFSP VQSVVGRTCY EVSHHFNVPC
DQAGESCPLA QSRASGQRER VLHLHHTPKG EEYVNIELAP LLDAHGEQAF FVEKMERLRV
AQGQPAAQGL IGRAPAFQHM LALVARVAPS QATVLLLGES GTGKELVAQA IHEASPRAQR
ALVAVDCSSL PENLFESELF GHERGAFTGA STARGGLIEA ASGGTLFLDE VGDIPLIMQV
KLLRLLETGT YRRVGSTELR HADIRVVSAT HRDLDRMVSQ ELFREDLYYR LSTFPIHLPA
LRERRDDIVL LAAALLERVA PQRKLRISEP ALRLLQAQDY PGNVRELRNL LERAALLCDG
NTVEASHIQQ ALSSGRRPSA GPRVHPQACD AGITDTAVSS LKGLTLAPGA LRTIERAALQ
QLVSGHRGSR ADLANKLGIS ERSLYRKLKA LE
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