Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnap_2537 |
Symbol | |
ID | 4689692 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polaromonas naphthalenivorans CJ2 |
Kingdom | Bacteria |
Replicon accession | NC_008781 |
Strand | - |
Start bp | 2674053 |
End bp | 2676323 |
Gene Length | 2271 bp |
Protein Length | 756 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 639835545 |
Product | (p)ppGpp synthetase I, SpoT/RelA |
Protein accession | YP_982761 |
Protein GI | 121605432 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG0317] Guanosine polyphosphate pyrophosphohydrolases/synthetases |
TIGRFAM ID | [TIGR00691] (p)ppGpp synthetase, RelA/SpoT family |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.00663733 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 0.650482 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAACATA AAGTGGCGGC AACGCACGCC CCCGCAATTT CCCCGGACTC GCTCAGTTCC ATCGTCGCGG CCACGGCCGA CAGCCTGCAC GGGCAGCCGC ATGTCCTGGT GCGTGCCCGC GCTTTCGCCG AGCCGCTGAT TGCCAGCGAA GTGATGGACA CCGGCGAAAA CATCCTGGCG CATGCCGATG CGGTGGTCGG TATTCTTAAA ACCATTGGCG GCTCCGAAGC GGTGCAGGCG GCCACTTACC TGGTGCATTC CTGCCAGCAC CTCAACAAGC CGCAGGATGT CATCGCCAAG GCTTTCGGCC CCAGCTATGC CGCTTTGGCG GTGGAAACCA CCAAGCTGAT CTATCTGCAG CGACAGACGC GCGCCGTCGA TGCCAAGTCG CAGCTGCACG ATGACCCTGC CGCCCAGACG GAGAACGTGC GCAGGATGCT GCTGGCGTTC TCGCGCGACT TGCGGGTGGT CATGCTGCGC CTGGCTTCGC GCCTGCAGAC CTTGCGCTAT TACGCGGCCA GCCGACAGGC TGCGCCCAGG GCCTTGGCGC ATGAGTCGCT GCATGTGTTT GCGCCACTGG CCAACCGCCT GGGCATCTGG CAGATCAAGT GGGAGATGGA AGACCTGGCG TTTCGTTTTC TGGAGCCTGA CACCTACAAG CAGATCGCCC GGCTGCTCGA TGAAAAACGT GCCGAGCGCG AGGTCTTCAT GGAGGCCCTG CGCGCGCAGC TTGAACGCGA TTTGAACCAG AACGGCATTG CCGCGCTGGT GCAGGGCCGG CCCAAGCACA TCTACAGCAT TGTCAAGAAA ATGCGCGGCA AGTCGCTGGG CTTTGACCAG GTGTTCGACA TCCGGGCGCT GCGCGTGATT GCCGCCGATG TGAAGGGCTG CTATGCCGCG CTGGGGTTTG TGCATTCGTG CTTTTCACCC GTCAACGGCG AGTTTGACGA CTACATCGCC AAGCCCAAGC CCAACGGCTA CCAGTCGCTG CACACGGTCG TTCGTGATGA GGGCGGGCGG GCCATGGAAA TCCAGATACG CACCCAGGCC ATGCACGACC ATGCCGAAAA CGGCGTGGCG GCGCACTGGG CTTACAAGGA AGCCGGAACC AAAGGCTACG CCGGCGTTTC GGCCAGCAGC GAATACGACG CCAAGATTGC GGTGCTGCGG CAACTGCTGG CCTGGGAGCG GGAACTTTCG GGTCCGGCTG CGCAGCGTGC GCGGGATGCC AATCAGGGCC TGTTCGAGGA CCGCATCTAT GTGCTGACGC CGGACGCAGC CATCGTCGAA TTGCCCCAGG GCGCCACGAC GGTTGACTTT GCCTACAGCG TGCATACCAG CTTGGGCCAT CGCTGCCGCG GCGCGCGCAT TGACGGCGTC ATGGTGCCGC TCAATACACC GCTGCAAAAC GGCCAGACGG TTGAAGTCAT CACGACCAAG GAAGGCGGGC CTTCGCGTGA CTGGCTCAAC CCGGAGTTGG GTTTCCTGTC GAGCAACCGG GCGAAATCGA AGGTGCGCGC CTGGTTCAAT GCGCTGGCCA TGGAGCAGAC CGTGGCCAAG GGCCGGGAGG CGGTTGAAAA ACTGCTCCAG CGCGAAGGCA AAACGGCCAT GAAGCTGCAG GATCTGGCGT TTCTGCTGGG CTTCAAGACG GCGGATGAAC TTTTTGAGGT CGTGGGCAAA GACGAGTTTT CCTTGCGCAC CATTGAAAAC ATGCTCAGGC CCCCCGAACC TGCGCCGTCG CCAGACGACT ATGTGCTGGC CAAAAAAACA CGGCAGTCCG AAAAATCCAG CGCTGCTGGA AAAGGCGGCA AGGGCAGCGT GCTGGTGGTG GGAATGGACT CCCTGCTGAC CCAATTGGCC AAATGCTGCA AACCCGCGCC CCCGGATGTC ATTCTTGGTT TTGTCACCAA GGGCAAGGGC GTGAGCATTC ATCGAAGCGA CTGCAGCAAT TTCCGCAACA TGGCCACCGG CAGCCCTGAC CGTGTCATCG AGGTGGAATG GGGGTCTGCA AAAGCCCCGG ACGGCGCGGT TTATCCGGTG GATGTGGCCG TGGAAGCAGC TGATCGGCAA GGTTTGCTGC GCGATATTTC AGAAGTGTTT GCCAAGGAAA AAATGAATGT GATCGGTGTG CAAACGCAGT CGGTCAAGGA CAACCGTGGC GGGACAGCCT GGATGACCTT CACGGTCGAG GTGGCCCAAT CGGGACGGCT CAACCGGGTG CTGGGCATCG TGGCCGATGT GCCGGGCGTG CGTTCAGCCC GAAGACGCTG A
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Protein sequence | MKHKVAATHA PAISPDSLSS IVAATADSLH GQPHVLVRAR AFAEPLIASE VMDTGENILA HADAVVGILK TIGGSEAVQA ATYLVHSCQH LNKPQDVIAK AFGPSYAALA VETTKLIYLQ RQTRAVDAKS QLHDDPAAQT ENVRRMLLAF SRDLRVVMLR LASRLQTLRY YAASRQAAPR ALAHESLHVF APLANRLGIW QIKWEMEDLA FRFLEPDTYK QIARLLDEKR AEREVFMEAL RAQLERDLNQ NGIAALVQGR PKHIYSIVKK MRGKSLGFDQ VFDIRALRVI AADVKGCYAA LGFVHSCFSP VNGEFDDYIA KPKPNGYQSL HTVVRDEGGR AMEIQIRTQA MHDHAENGVA AHWAYKEAGT KGYAGVSASS EYDAKIAVLR QLLAWERELS GPAAQRARDA NQGLFEDRIY VLTPDAAIVE LPQGATTVDF AYSVHTSLGH RCRGARIDGV MVPLNTPLQN GQTVEVITTK EGGPSRDWLN PELGFLSSNR AKSKVRAWFN ALAMEQTVAK GREAVEKLLQ REGKTAMKLQ DLAFLLGFKT ADELFEVVGK DEFSLRTIEN MLRPPEPAPS PDDYVLAKKT RQSEKSSAAG KGGKGSVLVV GMDSLLTQLA KCCKPAPPDV ILGFVTKGKG VSIHRSDCSN FRNMATGSPD RVIEVEWGSA KAPDGAVYPV DVAVEAADRQ GLLRDISEVF AKEKMNVIGV QTQSVKDNRG GTAWMTFTVE VAQSGRLNRV LGIVADVPGV RSARRR
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