| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_2438 |
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| Symbol | |
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| ID | 4688783 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas naphthalenivorans CJ2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008781 |
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| Strand | - |
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| Start bp | 2575213 |
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| End bp | 2577372 |
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| Gene Length | 2160 bp |
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| Protein Length | 719 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 639835448 |
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| Product | ribonuclease R |
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| Protein accession | YP_982666 |
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| Protein GI | 121605337 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGTGCGG TGCTGCATAA AGACCGCGTC AAGGCGCGCA TCGTGCGGCA TGACCGCAAG
AACCGGCCTG AAGGCCGCGT CACCGAAATC ATCGAACGCT CGCCCAATCC GATCATTGGG
CGCCTGCTCC AGGAAAGCGG AGTGTGGCTG GTCGCGCCTG AAGACAAGCG TTACGGTCAG
GACGTGTTGA TTCCCAAAGG CGCGATCGGA ACAGCCAAGA CCGGCCAGAT TGTGGTGGTG
CAACTGACCG AGCCACCAGC CCTGTTTGGC CAGCCGGTGG GACGCGTCAT GGAAGTGCTG
GGCGAAATTG ACGACCCGGG CATGGAAATT GAAATTGCCG TGCGCAAATA TGGCGTGCCG
CATGAATTCA GTGATGAAGC CCTCGGTTTG GCCCGCTCCC TGCCCGACGC CGTTCGCCCC
GTTGACAAGC AGCACCGCGT GGACCTGACG GATATTCCGC TGGTCACCAT CGACGGCGAA
GACGCGCGCG ATTTCGACGA TGCGGTCTAT TGCGAGCCGA CGAAGGTCGG ACGCGGCAAG
GGCTGGCGCC TGCTGGTGGC GATTGCCGAT GTCAGCCATT ACGTCGAAAC CGGCAGTGCG
ATTGACATCG ACGCCTACGA CCGCGCCACC AGCGTGTATT TTCCGCGCCG CGTGATTCCC
ATGCTGCCCG AAAAGCTGTC CAACGGCCTG TGCTCGCTCA ACCCCCATGT CGAGCGGCTG
TGCATGGTCT GCGACATGCT GGTCAATGCC AAGGGCGATG TTCACGCCTA CCAGTTTTAT
CCGGCGGTGA TGCTCAGCCA GGCGCGCCTG ACCTATACCG AAGTGGCGGC GATCCTGGGC
AACACGCGCG GGCCGGAAGC GCTGCAGCGC AAGTCCGTGG TGCCGCATTT GCTGCATCTG
CACGAGGTGT ACCAGGCCCT GCTCAAGGAG CGCGGCATAC GCGGCGCGGT CGATTTCGAA
ACCACCGAAA CCCAGATCGT CTGCGATGAA GTCGGGCGGA TCGAGAAAAT CATCCCGCGC
ACCCGCAACG TGGCGCACCG GCTGATCGAA GAGTCCATGC TGGCGGCCAA CGTCTGCTCG
GCCGACTTCA TTGCGCAGAG CAAGCACACG GCCCTGTTTC GCGTTCACGA AAGCCCGACC
CCCGAAAAAA TCGATTTGCT GCGCAATTAC CTCAAGGCGA TTGGCATTGG CATGACGGTC
AGCGACGACC CGGCGCCTGC AGAGTTCCAG CAGATTGCCA TGGCGACCAA GGACCGGCCG
GATGCGCAGC AGATCCACTC GATGCTGTTG CGCTCGATGC AGCAGGCGAT CTACACGCCG
ATGAATGGCG GCCACTTCGG TCTGGCCTAC GAGGCCTACA CGCACTTCAC CAGCCCGATC
CGCCGCTACC CCGACCTGCT GGTGCATCGG GTGATCAAGG CGATCCTGAA GAAGACCAAG
TACCAGTTGC CGGTATTGCC CACGCCGGGC GAGGCGGAAG CCAAGCTGTC CAAGCGGCTC
GCCACCCGTG TCAAGCTGCC GACCGAAAAG CCGAAAAAAG CTTCTGCTGA CCAGCTGGCC
TGGCAGGCAG CCGGCCTGCA TTGCAGCGCC AATGAGCGCC GTGCCGACGA AGCCAGCCGC
GACGTGGAAG CCTGGCTCAA GTGCAAGTAC ATGCGCGAGC ATCTGGGCGA GGAGTTTGGC
GGCGTGGTCA CGGCGGCCAC CGGCTTCGGC ATCTTTGTGA CGCTCGACGC CATGTATGTC
GAAGGCCTGG TGCATATCAC AGAGCTGGGC GGCGAGTATT TCCGCTTTGA CGAAGCCCGG
CAGGAGTTGC GCGGCGAGCG CAGCGGCATG CGCTATGCCC TGGGAACCCG GGTTCGGGTC
CAGGTCAGCC GGGTTGATCT GGATGGCCGG AAAATCGATT TTCGCCTGGT GCATGAAGGT
GACGACAAGG CCGGGCTGGT GAATCGGGCC ATGAAGGACA AGGCCGGTGG CTCTGCGGCT
GAACTGCCGC TGCAGGAACG CGGTGCCGGA TCCCGGCGCA GCGGGCGCAG CGCGCCTTCA
AAAAGCCGTC AGCCTCCCTC CGACCGAACA TCCCAGCCGC AGCCCAGGGC ACGCAAGACA
GCGGCTAAAA AAGCAGCGGC CAATCCGGGC ATGAAACAGG GCAAAAAGTC CCGTCGCTAG
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| Protein sequence | MRAVLHKDRV KARIVRHDRK NRPEGRVTEI IERSPNPIIG RLLQESGVWL VAPEDKRYGQ
DVLIPKGAIG TAKTGQIVVV QLTEPPALFG QPVGRVMEVL GEIDDPGMEI EIAVRKYGVP
HEFSDEALGL ARSLPDAVRP VDKQHRVDLT DIPLVTIDGE DARDFDDAVY CEPTKVGRGK
GWRLLVAIAD VSHYVETGSA IDIDAYDRAT SVYFPRRVIP MLPEKLSNGL CSLNPHVERL
CMVCDMLVNA KGDVHAYQFY PAVMLSQARL TYTEVAAILG NTRGPEALQR KSVVPHLLHL
HEVYQALLKE RGIRGAVDFE TTETQIVCDE VGRIEKIIPR TRNVAHRLIE ESMLAANVCS
ADFIAQSKHT ALFRVHESPT PEKIDLLRNY LKAIGIGMTV SDDPAPAEFQ QIAMATKDRP
DAQQIHSMLL RSMQQAIYTP MNGGHFGLAY EAYTHFTSPI RRYPDLLVHR VIKAILKKTK
YQLPVLPTPG EAEAKLSKRL ATRVKLPTEK PKKASADQLA WQAAGLHCSA NERRADEASR
DVEAWLKCKY MREHLGEEFG GVVTAATGFG IFVTLDAMYV EGLVHITELG GEYFRFDEAR
QELRGERSGM RYALGTRVRV QVSRVDLDGR KIDFRLVHEG DDKAGLVNRA MKDKAGGSAA
ELPLQERGAG SRRSGRSAPS KSRQPPSDRT SQPQPRARKT AAKKAAANPG MKQGKKSRR
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