Gene Pnap_2425 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnap_2425 
Symbol 
ID4688022 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolaromonas naphthalenivorans CJ2 
KingdomBacteria 
Replicon accessionNC_008781 
Strand
Start bp2561038 
End bp2562273 
Gene Length1236 bp 
Protein Length411 aa 
Translation table11 
GC content62% 
IMG OID639835435 
Productextracellular ligand-binding receptor 
Protein accessionYP_982653 
Protein GI121605324 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCCTTGC TTTTGGAGAA CACCTTGAAA TTTACAAAAC CTGTCCTGTT GGGCGGTGTG 
TTGCTGGCGA CGGCCATGTT CGCGCAGTCG GCCTCGAACA AGCCCATCAA GATCGGGGAA
ATCAACAGCT ATTCGACGAT GCCGCAGTTC ACCCAGCCTT ACCGCCAGGG CTGGCAACTG
GCCGTCGAGG AAATCAATCT GTCCGGTGGC CTGCTGGGCC GCAAGGTCGA GGTGATTGCC
CGCGACGACG CCGGCAAGCC CGAGGAAGCC CTGCGCCACG CCATCGAACT GACCTCGCGC
GAAAAGGTCG ATGTGCTGGC AGGAGGCTAT CTGTCCAACG TCGGCCTGGC CCTGGCCGAC
CATGCCCAGA AAAACAGACG GCTTTACATC GCCAGCGAGC CGCTGACCGA CGCCATCGTC
TGGGACAAGG GCAACCGCTA CACCTTCCGG CTGCGCCCCA GCACCTACAT GCAGGCCGCC
ATGCTGGTTG AGGAGGCAGC GAAAATGCCC GCCAGGCGCT GGGCGACGAT TGCGCCCAAC
TACGAATACG GCCAGAGCGC GGTGGCCAGC TTCAGGGAAT TGCTCAAGGC CAGGCGGCCC
GACGTGGAGT TCGTCGGCGA ACAGTGGCCG GCCCTGGGCA AGCTCGAAGC CGGAACCGCC
CTGCAAGCCA TGATGCAAAG CAAGCCCGAC GCGATTTTCA ACGTGACCTT TGGCGCCGAC
CTGGCCAAGC TGGTGCGCGA AGGCAACCAG CGCGGCATTT TCCCCAGGGT GCCGGTGGTC
TCGATGCTGT CGGGCGAGCC GGAATACCTC GATGTGCTGA AAGACGAAAC GCCCAAGGGG
TGGATCGTGA CCGGCTACCC GTGGGACCAG ATTGACTCCC AGGAGCACGC CAGCTTTGCC
GCCAACTACT ACCGCCGCTT CAAGGAATAC CCCAAGGTCG GCTCGGTGGT CGGCTATTCG
ACCATGCAGG CGATTTTTGC CGGCATCAAA AAGGCCAACT CGCTAGATAA CGAAAAGCTG
GTCGTCACGC TGCGCGGCCT GAAGTTCAGC ACGCCCTTCG GCCCGGCCGA GTTCCGCGCC
ATCGACCAGC AATCGACCAT GGGCGCCTAC GTCGGCAAGC TCGATATGCG CGGCAACAAG
GGAACGATGG TGAACTGGCG CTACGCCGAC GGCAAGGCGT ATTTGCCGAG TGATGCGTAT
GTCAAGGCGC GCCGCCCGGC TGATGCCATG AAGTGA
 
Protein sequence
MALLLENTLK FTKPVLLGGV LLATAMFAQS ASNKPIKIGE INSYSTMPQF TQPYRQGWQL 
AVEEINLSGG LLGRKVEVIA RDDAGKPEEA LRHAIELTSR EKVDVLAGGY LSNVGLALAD
HAQKNRRLYI ASEPLTDAIV WDKGNRYTFR LRPSTYMQAA MLVEEAAKMP ARRWATIAPN
YEYGQSAVAS FRELLKARRP DVEFVGEQWP ALGKLEAGTA LQAMMQSKPD AIFNVTFGAD
LAKLVREGNQ RGIFPRVPVV SMLSGEPEYL DVLKDETPKG WIVTGYPWDQ IDSQEHASFA
ANYYRRFKEY PKVGSVVGYS TMQAIFAGIK KANSLDNEKL VVTLRGLKFS TPFGPAEFRA
IDQQSTMGAY VGKLDMRGNK GTMVNWRYAD GKAYLPSDAY VKARRPADAM K