Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnap_2176 |
Symbol | |
ID | 4686918 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polaromonas naphthalenivorans CJ2 |
Kingdom | Bacteria |
Replicon accession | NC_008781 |
Strand | - |
Start bp | 2313015 |
End bp | 2316935 |
Gene Length | 3921 bp |
Protein Length | 1306 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 639835186 |
Product | ATP-dependent helicase HrpA |
Protein accession | YP_982405 |
Protein GI | 121605076 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1643] HrpA-like helicases |
TIGRFAM ID | [TIGR01967] ATP-dependent helicase HrpA |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.440944 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 0.199905 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | TTGCTTCCTT CCTTGTCCCC TCTGGCCATC ACTTTTCCCG AATCGCTGCC GGTTTCCGCC AAGCGCGACG ACATCGCCGC GGCGCTCACG GCGCACCAGG TCATCATCGT CTGCGGTGAA ACCGGCTCGG GCAAAACCAC GCAACTGCCG AAAATCGCCC TGGCACTGGG GCGCGGCAAG CTCAACTACC CGCCCGGACA GGGCAGGATG ATCGGCCACA CCCAGCCGCG CCGCATCGCT GCGTCCAGCG TCGCCAAGCG CATTGCCGAA GAGCTGAAAA CGCCGCTCGG CGACGTCGTT GGCTACAAGG TGCGTTTCCA GGACCGGCTG AGCCGCGATG CGTCGGTCAA GCTGATGACC GACGGCATCT TGCTGGCCGA AACGCAGACC GACCCGCTGC TGCGCGCCTA CGACACCATC ATCATCGACG AGGCGCACGA GCGCAGCCTG AACATCGACT TTTTGCTCGG CTACCTGCGC CAGCTGCTGC CGCGCCGGCC CGACCTGAAG GTCATCATTA CCTCGGCAAC CATCGACGCC CAGCGGTTCG CGGATTACTT CGCGTCAGCC AAGGGGCCGG CGCCGGTCAT CATGGTCTCG GGTCGCATGT TCCCGGTCGA GCAGCGCTAC CGCCCGTTCG AGGAGTCGCG CGACTACGGC CTGAACGACG CGATTGCCGA TGCGGTCGAT GAACTTTGGT TGAGCCCGCA CAGCGCGGGC GACATCCTGA TTTTCCTGCC CGGCGAGCGC GAGATCCGCG AAGCCGCCGA CCACCTGCGC AAGCACCTGG CGCACCAGCC GCTGACGCGC AATGCCGAGG TGCTGCCGCT GTTCGCCCGC CTGAGCCAGG CCGAGCAGGA CCGGATTTTT GACGGCCACA GCGGCCGGCG CATCGTGCTG GCGACCAACG TGGCCGAAAC CTCATTGACC GTTCCGGGCA TCAGATACGT CATTGACGCA GGCACGGCGC GCGTCAAGCG CTACAGTTTC AGGAACAAGG TCGAGCAGCT GATGGTCGAG CCGATCTCGC AGTCGGCCGC CAACCAGCGC GCGGGCCGCT GCGGCCGGGT GGCCGACGGC ATCTGCATCC GGCTGTACGA CGAGCCCGAC TTTCTGGGCC GGCCGCGCTT CACCGACCCC GAGATTTTGC GCAGTTCGCT GGCCTCGGTG ATCCTGCGCA TGAAGTCGCT GCACCTCGGA ACGATTGAAA ACTTTGCCTT CATCGAGCCG CCGCAGGGCC GCGCGATTGC CGACGGCTAC CAGCTGCTGG CCGAACTCGG CGCGGTCAAT GACGACAACG AACTCACGCC CGTCGGCTGG ACGCTGGCCA AGCTGCCGCT GGACCCGCGC GTCGGCCGCA TGATCCTGGA GGCCAAGGAC CGGCAGGCGC TTGACGAGGT GCTGGTGATT GCCAGCGCGC TGAGCGTGCA GGACGTGCGC GACCGGCCGA TGGACAAGCA GGCGCAGGCC GACCAGGCGC ATGCCAAGTT CGACGACGAG AAGAGCGAAT TCGTCGGCTT CCTGAAGCTG TGGAAATGGC TGGGCGATTC GCGCGGCGGG CATGACGCGA CGCACAAACT TACGAACCGC CAGTATGAAA CCCTGCTGCG CGAGAACTTC GTCAACATCC GTCGCGTGCG CGAATGGCGC GACATCCATT CGCAATTGCA GGCGGTGGTC GGCGAGCAGG GCTGGCACCT CAATGACAAG CCGGCCAGCT ACGAGCAGCT GCATTTGTCG CTGCTGTGCG GCCTGCTGGG CAACATCGGC CTGAAAAGCG AAGAGGACGA CTGGTACCTG GGCGCGCGCG GCATCCGGTT TTACCGCCAC CCCGGCGCGC GGCTCAGCAA GAAGCCGGGC CGCTGGATCG TAGCAAGCGA GCTGGTCGAA ACCACGCGCC TGTTTGGCCG GGGCATCGCC AACATCGACC CGCAGTGGAT CGAGCAGGTC GGCGGCCATC TTTTGAAGAA GCAGCTGCTC GACCCGCACT GGGAGAAAAA AGCCGCGCAG GTGACCGCGC TGGAGCGCGC CACGCTGTAC GGCCTGGTGG TTTACAACGG CCGGCGCGTC AACTTTGGCC GGGTCGATCC GGTGACCTCG CGCGAAATCT TCATCCGCGA GGCGCTGGTG GCCGGCAACT GGGACACGAA ACTGCCCTTC CTGGCCGCCA ACGAAAAGAT GATTGCCCAT GTCCAGGACC TGGAGCACAA GGCGCGCCGG CAGGACGTGC TGGTCGATGA GGAGCTGATC TACGCTTTCT ACGACCAGCA ACTGCCGGCC GACATCTGCA CCGGCGCGGG CTGCGAAAGC TGGTACAAAA CCGAAGCCAG AAAGCAGCCG AATCTGCTGC TTTTGACGCA AGACGAGCTG ATGCGCCACG AAGCGGCCGG CATCACGACC CAGGCTTTTC CGAAAACGCT GCGGCTGGGC GGCGTCGATT GCCTGGCGAC CTACCTGCAC GAGCCCGGCG ACGCGCGCGA CGGCGTGACC GTCGATGTGC CGCTGTTCGC GCTGAACCAG GTCAACGAGG AGCGCTGCGA ATGGCTGGTG CCCGGCATGC TGAAGGACAA GATCCAGGCG CTGATCAAGA CCCTGCACCA GCGCCCGCGC TCGCGCCTGG TGCCGCTGCC CGACACGGCC GCGCGCATGG CCGGGGAGCT GATGCAGGCC GAGAAGTTCG GCACCGGCTC GCTGACCGAC GCGGTCTTGA AGTGGGTGCG CGATGCCACG TCGCTCGACA TCAAGCGCGG CGACTTGAAG CTGGACATGC TGCCGCCACA CCTGTTCATG AACTTTCGCG TGGTCGATGA GCACGGGCGC CAGCTGGGCG CGGGCCGCAA CCTGGGCGCG CTCAAGGGCG AGCTGGGCTC GCAAGCGCGC GGGGCTTTTC AGGCGCTGGC GGGGCTGAAG AACCTGGGCA AGGCGGCGCC TGCACCCGCC AATCCGGGAA AAACCGATGC TTCAGCGCAG AATTCAGCAT CAAATAAGCC TTCTGCGCAA GCAGGACGGG CGCAAACAGC TCCTGAAAAG ATAGCAATTA AAACACCGGA GCGCTACACC AGCTGGAGCT TTGGCGAATT GCCCGAGCTG ATGGAAATCG GCAAGGGCGC GCAGACCTTG ATTGGTTTTC CGGCGCTGAT CGACCTGGGC GATGCGGTGA CCATCGAGGT GTTCGACGAG CCCGATGCAG CCGCCATCAA GCACCGCGCC GGCTTGCGCC GCCTGTTTTC GCTGCAGATC AAGGACGCGC TGAAATACCT GGAAAAAAAC CTGCCCGACC TGCAGAAAAC GGCGACTTCC TACATGCTGG TGGGCCGCGC GGCCGACAAC TCGGGCGGCG GCACGGTGGA CGAGCTGCGC CAGCAGATCA TCGAGGTGGC GCTGGACCGG GCGTTCTTGC TCGATCCGCT GCCGACCTGC GAGGCCGACT TCAAGAAACG GGTGGACGAC GGACGCGGCC GCCTGACGCT GATTGCCAGC GAGGTGGCGC GCCTGGCCGG CGCCATCCTG ATCGAGTTCG CCGTGGCGCA GCGAAAGATC AAGGACACGA AAAACGCGAC GGAAGCGGTG CAGGATGCCG CTCAGCAGTT GCAGCGACTG GTGCCCAAGA AGTTCCTGAC CACCACGCCT TACGGGCAGT TGCAGCATTT CACCCGCTAC CTCAAGGCGA TCACCCTGCG GCTCGAAAAG TGGCGTGCCG ACCCGGCCAG GGACGCAGCC CGCATGGTTG AACTGCGGCC GCAGGAGCAG CGCTACTGGC GCTTGGTGGC CGAGCGCAAG GGCGTACTGG ATGCGCGCAT GCAGGAATAC CGCTGGCTGC TCGAAGAGCT GCGGGTGAGC TTCTTCGCGC AGGAACTGCG AACGCCGCAG CCGGTCAGCA TCAAGCGGCT GGACAAGCTC TGGGCGCAGC TCAACAGCTG A
|
Protein sequence | MLPSLSPLAI TFPESLPVSA KRDDIAAALT AHQVIIVCGE TGSGKTTQLP KIALALGRGK LNYPPGQGRM IGHTQPRRIA ASSVAKRIAE ELKTPLGDVV GYKVRFQDRL SRDASVKLMT DGILLAETQT DPLLRAYDTI IIDEAHERSL NIDFLLGYLR QLLPRRPDLK VIITSATIDA QRFADYFASA KGPAPVIMVS GRMFPVEQRY RPFEESRDYG LNDAIADAVD ELWLSPHSAG DILIFLPGER EIREAADHLR KHLAHQPLTR NAEVLPLFAR LSQAEQDRIF DGHSGRRIVL ATNVAETSLT VPGIRYVIDA GTARVKRYSF RNKVEQLMVE PISQSAANQR AGRCGRVADG ICIRLYDEPD FLGRPRFTDP EILRSSLASV ILRMKSLHLG TIENFAFIEP PQGRAIADGY QLLAELGAVN DDNELTPVGW TLAKLPLDPR VGRMILEAKD RQALDEVLVI ASALSVQDVR DRPMDKQAQA DQAHAKFDDE KSEFVGFLKL WKWLGDSRGG HDATHKLTNR QYETLLRENF VNIRRVREWR DIHSQLQAVV GEQGWHLNDK PASYEQLHLS LLCGLLGNIG LKSEEDDWYL GARGIRFYRH PGARLSKKPG RWIVASELVE TTRLFGRGIA NIDPQWIEQV GGHLLKKQLL DPHWEKKAAQ VTALERATLY GLVVYNGRRV NFGRVDPVTS REIFIREALV AGNWDTKLPF LAANEKMIAH VQDLEHKARR QDVLVDEELI YAFYDQQLPA DICTGAGCES WYKTEARKQP NLLLLTQDEL MRHEAAGITT QAFPKTLRLG GVDCLATYLH EPGDARDGVT VDVPLFALNQ VNEERCEWLV PGMLKDKIQA LIKTLHQRPR SRLVPLPDTA ARMAGELMQA EKFGTGSLTD AVLKWVRDAT SLDIKRGDLK LDMLPPHLFM NFRVVDEHGR QLGAGRNLGA LKGELGSQAR GAFQALAGLK NLGKAAPAPA NPGKTDASAQ NSASNKPSAQ AGRAQTAPEK IAIKTPERYT SWSFGELPEL MEIGKGAQTL IGFPALIDLG DAVTIEVFDE PDAAAIKHRA GLRRLFSLQI KDALKYLEKN LPDLQKTATS YMLVGRAADN SGGGTVDELR QQIIEVALDR AFLLDPLPTC EADFKKRVDD GRGRLTLIAS EVARLAGAIL IEFAVAQRKI KDTKNATEAV QDAAQQLQRL VPKKFLTTTP YGQLQHFTRY LKAITLRLEK WRADPARDAA RMVELRPQEQ RYWRLVAERK GVLDARMQEY RWLLEELRVS FFAQELRTPQ PVSIKRLDKL WAQLNS
|
| |