| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_2050 |
|---|
| Symbol | tolB |
|---|
| ID | 4689778 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | - |
|---|
| Start bp | 2176027 |
|---|
| End bp | 2177316 |
|---|
| Gene Length | 1290 bp |
|---|
| Protein Length | 429 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 639835061 |
|---|
| Product | translocation protein TolB |
|---|
| Protein accession | YP_982280 |
|---|
| Protein GI | 121604951 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0823] Periplasmic component of the Tol biopolymer transport system |
|---|
| TIGRFAM ID | [TIGR02800] tol-pal system beta propeller repeat protein TolB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCATCA CACCATCTTT CAGCCGCCGA AGCGTTGTCA GCCTGTTGGC GGCCGGCGCA
TTTTCATCCA TGTCGGCATT CGCCCAGTTT CGCGTGGAAG TGTCGGGCGT TGGCATGACT
CAGTTGCCCA TCGCCATTGC ACCCTTCAGG GGTGAAGCGC AATCACCACA AAAAATCGGC
AGCATCGTCA AGGCTGATCT TGAGCGGAGC GGCATGTTTC GCGGTGTTGA CGCTGGAGGC
GTCGTGGCAG ATGAAAACAC CCGTCCCGAC CTGGCAAGCT GGCGGCAAAA AGGCGCCGAT
GCGATGGTGA CCGGCAGTGT TTCACCGCTT GCGGACGGGC GCTTTGATGT TCGCCTTCGG
TTGTGGGACG TTGTGCGCGA GCAGGATCTT GGCGGCCAGA GCTACACCGT CACAAAATCC
GACCTGCGTC TGTCTGCGCA CCGAGTCTCT GATTTTGTGT ACGAAAAGCT GACGGGTGAA
AAAGGCATTT TTTCCACGCG GATTGCCTAC GTGACCAAGG CCGGCCAGCG CTACACCTTG
TGGGTGGCTG ATTCTGATGG AGAAAGTGCC CAGTCAGCCT TGGCAAGTCC TGAACCCATC
ATTTCTCCCG CATGGTCGCC CAGTGGCGCC CAATTGGCTT ATGTGTCCTT TGAGTCCCGC
AAGCCAGTGA TTTATTCGCA TGACGTAGCA ACCGGAAAGC GGCGCTTGCT GGCTAATTTC
AGGGGCTCCA ACAGCGCGCC TGCCTGGTCC CCGGATGGCA GCCAACTGGT TGCCACGTTG
AGCCAGGCGG GCGGCTCGCA AATTTATTCA ATCGGCCTGA ATGGCGGTGA TCCGAAGCGG
CTGACACAGT CATCGAGCAT TGATACCGAG CCCGCATTTT CCCCGGATGG GCGTTTGATT
TATTTTGTCA GCGACCGGGG CGGCTCGCCG CAGATTTACC GAATGAGTCC TGCGGGCGGC
AACGCAGAAA GAGTTACCTT CACTGGCAGT TACAACATAT CGCCGGTGGT GAGTCCCGAT
GGAAGATGGC TGGCATATGT TTCCCGAGTC GGCGGCGGAT TCAAGTTGCA TGTCATGGAA
CTCTCCACCG GAACGGTGAC GTCGATCACC GATACTTCTG CCGATGAAAG CCCGAGTTTC
GCCCCGAACA GCCGCCTGAT TGTTTATGCA ACACAGCAGC AGGGCAAGGA AGCGCTGATG
ACAACCACGC TGGACGGCAA GATAAAAGCA CGTTTGTCCG GAGCAGGCGG TGACATTCGC
GAGCCTGACT GGGGTCCGTT CCAGCGATAG
|
|---|
| Protein sequence | MSITPSFSRR SVVSLLAAGA FSSMSAFAQF RVEVSGVGMT QLPIAIAPFR GEAQSPQKIG
SIVKADLERS GMFRGVDAGG VVADENTRPD LASWRQKGAD AMVTGSVSPL ADGRFDVRLR
LWDVVREQDL GGQSYTVTKS DLRLSAHRVS DFVYEKLTGE KGIFSTRIAY VTKAGQRYTL
WVADSDGESA QSALASPEPI ISPAWSPSGA QLAYVSFESR KPVIYSHDVA TGKRRLLANF
RGSNSAPAWS PDGSQLVATL SQAGGSQIYS IGLNGGDPKR LTQSSSIDTE PAFSPDGRLI
YFVSDRGGSP QIYRMSPAGG NAERVTFTGS YNISPVVSPD GRWLAYVSRV GGGFKLHVME
LSTGTVTSIT DTSADESPSF APNSRLIVYA TQQQGKEALM TTTLDGKIKA RLSGAGGDIR
EPDWGPFQR
|
|---|
| |