| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_2009 |
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| Symbol | truB |
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| ID | 4688897 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas naphthalenivorans CJ2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008781 |
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| Strand | - |
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| Start bp | 2133526 |
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| End bp | 2134569 |
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| Gene Length | 1044 bp |
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| Protein Length | 347 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 639835017 |
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| Product | tRNA pseudouridine synthase B |
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| Protein accession | YP_982239 |
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| Protein GI | 121604910 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0130] Pseudouridine synthase |
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| TIGRFAM ID | [TIGR00431] tRNA pseudouridine 55 synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.845229 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.607065 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCCCAA AATCTTCTCC CCGCCAGAAA ATCCAGCGAC GTCCCGTTCA CGGCGTGCTG
CTGCTCGACA AGCCGCTGGG CCTGTCGAGC AACCAGGCGC TGCAAAAAGC CAAATGGCTG
CTGCGGGCCG ACAAGGCTGG TCATACCGGC ACGCTCGATC CGCTGGCCAC CGGCGTGTTG
CCGCTGTGCT TTGGCGCGGC CACCAAGTTC AGCCAGTTGC AGCTGGACGC CGACAAGACC
TACGAGGCGC TGCTGCTGCT GGGCCAGAAA ACCAGCACGG CCGACGCCGA AGGCGAGGTG
ATTGAAACCC GGCCCGTGCC GGAGATCACG CCCGAACTGC TGGCGTCCCT CACTCAGCGC
TTTACCGGCC CGCTGGCGCA GGTTCCGCCG ATGTATTCCG CGCTGAAGAA AGACGGCAAG
GCCTTGTATG AATACGCCCG CAAGGGCATC GAGGTTGAGC GGGAAGCCCG CCATATCACG
ATTTTCAAGC TAAATATGGT TCTTGCGCAC GACCCACGGG CGAAAGTAGC TATTAAAATC
ATAGTAAGCT GCAGCAAGGG AACCTACATC CGCACGCTCG GTGAAGACAT CGGCGAGGCT
CTGGGCTGCG GCGCGCACCT GGGTTCCTTG CGCCGGATCG AAACCGGCGG GTTCACGGCG
GCGCAATGCG TGACGCTGGC GGCGCTCGAA GCCATGACTG AGGCTGAACG CGAAGCCTGT
TTGCTGCCGC CCCAGTCGCT GGTGGCCGCT TACCCGTCTG TCACATTGGA TGCTGATAAT
GCAGGGCGCT TTTTGAGCGG TCTGCGGCGC CGGGGCCAGT GGGGCGATGA CGCGCCGCTG
GTGCAGGTCT ATGGCCGCGA ACCGGCGGCA TTTTTAGGCT CGGCCCATAT CACGGCCGAC
GAACTGATTC CCCAGCGCTT GCTGAGTCCG GTTGAAGTCC AGGACATCCT CCTGCAATCG
GCCCGGCGCG CTGCTGAAGT TTTAACGTCA GTTTCCATGG CCGCAGCCTC CGAACCCACG
GATGCCGGCT CTTTTCAACA TTAA
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| Protein sequence | MTPKSSPRQK IQRRPVHGVL LLDKPLGLSS NQALQKAKWL LRADKAGHTG TLDPLATGVL
PLCFGAATKF SQLQLDADKT YEALLLLGQK TSTADAEGEV IETRPVPEIT PELLASLTQR
FTGPLAQVPP MYSALKKDGK ALYEYARKGI EVEREARHIT IFKLNMVLAH DPRAKVAIKI
IVSCSKGTYI RTLGEDIGEA LGCGAHLGSL RRIETGGFTA AQCVTLAALE AMTEAEREAC
LLPPQSLVAA YPSVTLDADN AGRFLSGLRR RGQWGDDAPL VQVYGREPAA FLGSAHITAD
ELIPQRLLSP VEVQDILLQS ARRAAEVLTS VSMAAASEPT DAGSFQH
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