Gene Pnap_1924 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnap_1924 
Symbol 
ID4686332 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolaromonas naphthalenivorans CJ2 
KingdomBacteria 
Replicon accessionNC_008781 
Strand
Start bp2045673 
End bp2046107 
Gene Length435 bp 
Protein Length144 aa 
Translation table11 
GC content60% 
IMG OID639834933 
Productbiopolymer transport protein ExbD/TolR 
Protein accessionYP_982155 
Protein GI121604826 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0848] Biopolymer transport protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.645056 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACTTTC GTCCTCATGC GCGCGTCGAG CCGGAAATCA ACCTGATTCC GTTCATCGAT 
GTGCTGCTGG TGGTGCTGAT CTTTTTGATG CTTTCGACCA CCTACAGCAA ATTCACCGAA
CTCCAGGTCA AGCTGCCGGC CGCCGATGCG GAGCAACTGC GCGACTACCC CAGGGAAGTG
GTCGTTGCCG TCAGCAGCGA TGGCCGCTAC ATGGTCAATA AAACCTTGGT CGATGGGCGG
GGAATCGAAG TGCTGGGCGC AGCACTCACC CTGGCAGCCA AGGCCGGCAA GGAGAGCGTC
ATCATCATCA GCGCCGATGC CAGCGCCACC CACCAGGCCG TCATCACCGT GATGGAGGCG
GCCCGGCGCC AGGGCCTGAC GCAGATCACT TTTGCCACCC AGAGTTCGAG TTCGCTGCAG
GCAGGCGTGA AGTAA
 
Protein sequence
MNFRPHARVE PEINLIPFID VLLVVLIFLM LSTTYSKFTE LQVKLPAADA EQLRDYPREV 
VVAVSSDGRY MVNKTLVDGR GIEVLGAALT LAAKAGKESV IIISADASAT HQAVITVMEA
ARRQGLTQIT FATQSSSSLQ AGVK