| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_1877 |
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| Symbol | hfq |
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| ID | 4686093 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas naphthalenivorans CJ2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008781 |
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| Strand | + |
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| Start bp | 2001676 |
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| End bp | 2001945 |
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| Gene Length | 270 bp |
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| Protein Length | 89 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 639834884 |
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| Product | RNA-binding protein Hfq |
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| Protein accession | YP_982108 |
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| Protein GI | 121604779 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1923] Uncharacterized host factor I protein |
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| TIGRFAM ID | [TIGR02383] RNA chaperone Hfq |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.542624 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | TTGAACACGG AAAATATCGT GAGCAATAAC AAAGGCCAGC TCTTGCAGGA TCCATTTCTC
AACACCTTGC GTCGCGAGCA TGTTCCTGTT TCGATTTATC TCGTCAATGG GATCAAATTG
CAGGGCCAGA TCGAATCCTT CGATCAATAC GTGGTTCTGC TTCGCAATAC CGTCACGCAG
ATGGTTTACA AACATGCGAT TTCCACCATC GTTCCTGGCC GCGCTGTGAA TTTTTCGACG
GCCGAGTCTG AAGAATCACC AACCAGCTGA
|
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| Protein sequence | MNTENIVSNN KGQLLQDPFL NTLRREHVPV SIYLVNGIKL QGQIESFDQY VVLLRNTVTQ
MVYKHAISTI VPGRAVNFST AESEESPTS
|
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