| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_1611 |
|---|
| Symbol | |
|---|
| ID | 4687161 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | + |
|---|
| Start bp | 1698427 |
|---|
| End bp | 1699410 |
|---|
| Gene Length | 984 bp |
|---|
| Protein Length | 327 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 639834614 |
|---|
| Product | patatin |
|---|
| Protein accession | YP_981846 |
|---|
| Protein GI | 121604517 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1752] Predicted esterase of the alpha-beta hydrolase superfamily |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.000105595 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTTTAA TGCAAATGCG AATTAGTCGC AATATCTTTG GGGCGGCTGG CGTATCCGTG
GCCTGCAGGC CCATGCTGGG GTGGCTGGCA AAACTGGTGC TTCCTGCCTT GCTGGTCGCG
GGCTGCACTT CGACGCCGGT GGCGCCCGTC AAGCCGGTTG CGCCGGATGT CGGCACGGCG
CCAGCCCTCA GGAAGCCGCT GAAGATCGGC TTGGCGCTGG GCGGCGGCGC GGCGCGCGGT
TTTGCCCATG TCGGCGTGAT TGCGGTGCTT GAAGAGGCTG GGCTCAGGCC GCAGGTCGTG
GTGGGCACAT CGGCCGGCAG CCTGGTCGCG GCGATTTACG CCACCGGCAA GACCAGCGCC
CAGCTGCAGC AGACCGCGCT CGGCATGGAA GAGGTGGCCA TTACCGACTG GATGCTGCCG
ATTATTGGCA AGGGCATGTT TCGCGGTGAT GCGCTGGGCC GCTATGTCAA CCAGCTGGTG
GGCGGGCGGC TGATCGAGAA CATGGTGATT CCGCTGGGCA TCGTGGCCAC CGACCTCAAC
AGCGGCAAGG CGGTGCTGTT TCGCAGCGGC GACACCGGCA CGGCGGTGCG GGCGTCCAGC
GCGGTGCCGG CGGTGTTCGT GCCGGTGAAG ATCAGCGGCC ATGAATACGT CGATGGCGGC
CTGGTGTCGC CGGTGCCGGT GCGCTTTGCC CGGCAGATGG GCGCCGACGT GGTGATTGCC
GTGGACATTT CGAGTCCGCC CGAGGGCAAC CCGGCCGAAG GCACGCTGCA GATTTTGCTG
CAGACCTTTG CCATCATGGG AAAAAGCATC AACCAGTACG AACTCAGGGA AGCCGATGTG
GTGGTGCGGC CTTCGCTGGT TGGCTTGAAG AGCGCCGATT TTTCGGCCCG CAAGCTGGCC
ATCGATTCGG GCCGGGCGGC GATGCTGGCG GCGCTTCCGG CGCTGAAGGC GAAGCTGGCC
GCCGGCATGC TGGCTGTTCC TTGA
|
|---|
| Protein sequence | MSLMQMRISR NIFGAAGVSV ACRPMLGWLA KLVLPALLVA GCTSTPVAPV KPVAPDVGTA
PALRKPLKIG LALGGGAARG FAHVGVIAVL EEAGLRPQVV VGTSAGSLVA AIYATGKTSA
QLQQTALGME EVAITDWMLP IIGKGMFRGD ALGRYVNQLV GGRLIENMVI PLGIVATDLN
SGKAVLFRSG DTGTAVRASS AVPAVFVPVK ISGHEYVDGG LVSPVPVRFA RQMGADVVIA
VDISSPPEGN PAEGTLQILL QTFAIMGKSI NQYELREADV VVRPSLVGLK SADFSARKLA
IDSGRAAMLA ALPALKAKLA AGMLAVP
|
|---|
| |