| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_1570 |
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| Symbol | |
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| ID | 4688344 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas naphthalenivorans CJ2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008781 |
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| Strand | + |
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| Start bp | 1658567 |
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| End bp | 1660276 |
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| Gene Length | 1710 bp |
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| Protein Length | 569 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 639834573 |
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| Product | transcriptional regulator NifA |
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| Protein accession | YP_981805 |
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| Protein GI | 121604476 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3604] Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains |
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| TIGRFAM ID | [TIGR01817] Nif-specific regulatory protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.840602 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.572476 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTGAATA CACAAATGAC TGAAGCTCGG CGCGAGCTGA ATGCGGTTTA TGAAGTCAGC
AAGACGCTGG CCACTTCGCT GGACGTTGCC AAGACCTTTC GCGAAGCATT GAACTATCTG
GTGCAGGCCT TTGACTGGCG TCGTGCCTTC GTGGTGATCG GCGAGCCCGA AGGCCGGCTG
CGCGGCCTGT GCGCCGTGGG TCTCACGCGC GAGGAGCAGC AGCGCCTGCA GTTCCAGTCC
GGCGAGGGAA TCGTCGGCCG GGTTTATGCC AATGGCATTC AGGTCATGGT GCCCGACGTG
AACGTCGAGC CGCTGTTTCT CAATCGCACG GGCGGCGCCG ACCAGTCCCC GGGAGTTGGC
GTTGCCATGC TGGTCACGCC CATTCGCGCC GACCGCCGAA CCGTCGGCGT GCTGGCCATC
GACTGCCTGA ACCCCGGTGA GCGTCGCGGA TTCTCCGACA ACCTTCAACT GCTCAAGATG
GTCGCCACGC TCATGGGGCA GGCGCTGCTG CTCAACCGCA GCGTCAGCGC CGCGCACGAC
AGCCTGCAGG ACGAGGTGCG CCGCATGCAC AAGGTGCTCA AGCCCAGCAA GCAGATCGAG
CAGGTGGTCG GTATTTCCGC GCCGATGCAG GACGTGTTCG AGCAGGTTCA CCAGGTCGCG
CCGGCCCGCA CCACGGTGCT GCTGCGCGGC GAGAGCGGCA CCGGCAAGGA AGTGATTGCG
CGCGCGATTC ACAACCTTTC GCCGCGTAAG CGCGAAGCCT TTGTCTGTGT CAACTGTGCG
GCGCTGACCG AGTCGCTGCT TGAAAGTGAG CTGTTCGGCC ACGAGAAGGG CGCCTTCACC
GGCGCGCAGG GCCAGCGCAA GGGCCGCTTC GAGATGGCCC ATGGTGGCAC GCTGTTTCTC
GACGAAATCG GCGACATTTC AGCGTCGTTC CAGGCCAAGC TCCTGCGCGT GCTGCAGGAG
CGCGAATTCG AGCGCGTGGG CGGCGGCACA GCCGTGAAGG TGGATGTGCG CCTGATCCTG
GCCACCAACC GCAACCTTGA GCGCATGGTG CAGGCCGGCG AGTTCCGCGC CGACCTGTAC
TACCGCATCA ACGTGGTCAG CATCCAGCTG CCGCCGCTGC GCGAGCGGCG CGAGGACATT
CCGGCGATGG CCGGGCATTT CCTGGCGCGC TTCAACCGCG AGAACGTGCG CGCCATCCAG
TTCAGCCCGG CCGCCATGCG GGTGCTGAGC AGCTGCTACT GGCCCGGCAA CGTGCGCGAA
CTGGAGAACT GCGTCGAACG CACGGCCACC ATGACGCATG ACAATGTCAT CAACGACCTG
GCGTTTCCGT GCCAGAGCAA CCGCTGCCTG ACCCAGGTGC TGCATCACAA CGAACGCATA
GACGCAGTGC GTCCCGCGCG GCTGGCCGAC ATTCCGATCA CCGAAGTGCC GATGGCCCCG
CCGCGTTCCG ATGCCGGCGG CAACGCCGGC CTGCCGCTAC CCGCCGATTC CAGGCCGGAG
GCCAGCACTT TCGACGATGG CATGGATGAG TCCGATGAGG CGCTTGCCCG CACCGACGAT
GGAAAGCCCG ACGGCGAGCG CGAACGGCTG GTCTGGGCCA TGGAGCGCTG CGGCTGGGTT
CAGGCCAAGG CGGCCCGCCT GCTGAAGATA TCGCCACGCC AGATGGGCTA CGCGCTGCAA
AAGCACGACA TCGAAGTGCG CAAGTTCTGA
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| Protein sequence | MVNTQMTEAR RELNAVYEVS KTLATSLDVA KTFREALNYL VQAFDWRRAF VVIGEPEGRL
RGLCAVGLTR EEQQRLQFQS GEGIVGRVYA NGIQVMVPDV NVEPLFLNRT GGADQSPGVG
VAMLVTPIRA DRRTVGVLAI DCLNPGERRG FSDNLQLLKM VATLMGQALL LNRSVSAAHD
SLQDEVRRMH KVLKPSKQIE QVVGISAPMQ DVFEQVHQVA PARTTVLLRG ESGTGKEVIA
RAIHNLSPRK REAFVCVNCA ALTESLLESE LFGHEKGAFT GAQGQRKGRF EMAHGGTLFL
DEIGDISASF QAKLLRVLQE REFERVGGGT AVKVDVRLIL ATNRNLERMV QAGEFRADLY
YRINVVSIQL PPLRERREDI PAMAGHFLAR FNRENVRAIQ FSPAAMRVLS SCYWPGNVRE
LENCVERTAT MTHDNVINDL AFPCQSNRCL TQVLHHNERI DAVRPARLAD IPITEVPMAP
PRSDAGGNAG LPLPADSRPE ASTFDDGMDE SDEALARTDD GKPDGERERL VWAMERCGWV
QAKAARLLKI SPRQMGYALQ KHDIEVRKF
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