Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnap_1560 |
Symbol | |
ID | 4689468 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polaromonas naphthalenivorans CJ2 |
Kingdom | Bacteria |
Replicon accession | NC_008781 |
Strand | + |
Start bp | 1646981 |
End bp | 1648879 |
Gene Length | 1899 bp |
Protein Length | 632 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 639834563 |
Product | 4-hydroxyphenylpyruvate dioxygenase |
Protein accession | YP_981795 |
Protein GI | 121604466 |
COG category | [E] Amino acid transport and metabolism [G] Carbohydrate transport and metabolism [R] General function prediction only |
COG ID | [COG1082] Sugar phosphate isomerases/epimerases [COG3185] 4-hydroxyphenylpyruvate dioxygenase and related hemolysins |
TIGRFAM ID | [TIGR01263] 4-hydroxyphenylpyruvate dioxygenase |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.288895 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGCCATT CAATCGCCAC TGTCTCGCTG TCTGGAATGC TGCGCGAGAA GCTGCAGGCA GCAGCCGCTG CGCACTTCGA TGGCGTGGAA ATCTTTGAAA ACGACCTGCT GCAGTTCCCG GGAACGCCGG CCGAGGTGCG CCGCATTTGC GAGGATCTGG GCTTGCGCAT CGACATGTTC CAGCCGTTTC GTGACTTCGA CGGCACCACG CCCGCGCAGG TCGCTCGCAG TCTGGAACGC GCCGAACGCA AGTTCGACGT GATGCAGGAG CTGGGCACTG AATTGATTCT GGTGTGCTCC AACGTGCAGC CCGACGCGCT CGGCGATGTC GATCAACTCG CCGGGCAATT CCACCAGCTC GCCGAACGCG CCGGCAGGCG CGGCATGCGC ATTGCCTACG AGGCGCTGGC CTGGGGCAGC CAGGTCAAGC TCTGGTCCCA GGCCTGGAGC GTGGTCGAGC GCGTCAACCA CCCGCACATG GGGCTGGCGC TGGACAGCTT TCACACGCTG TCGCTGCGCG ACGACCCGGG CGGCATCGCC CGGCTGCCGG GCGAGAAGAT TTTCTTTGTC CAGCTGGCCG ATGCCCCGTG GGTGAACACC GACGTGTTGA CGCACAGCCG CCATTACCGC TGCTTTCCGG GCCAGGGCGA GATGGAGGTG ACCAGGTTCA CTGCGGCCGT CATCGAGTCG GGCTACAGCG GGCCGCTTTC GCTGGAAATC TTCAACGATG AATTCCGCTC CGCGCCGGCG CGGGCCAATG CGGTCGATGC CAGGCGCTCG CTGCTGTGGC TCGAAGACCA GGTGTGCCAG AGTCGGGCGA AGGATGCACC GCCTTGCAAG GCGCCGCTGT TCGCGCCGCC GCCAGCGCCC GTGCTGACTG GATGGGCGTT CGTCGAGTTC GCCGTGGACC CGGCCGCAGG CGGCCGGCTG GCCGCGTGGC TTCAGGCCAC TGGTTTTCAC CGCATCGGCC ATCACCGCTC GAAGAAGGTT GATCTTTATG GCCAGGGCGA GGTGCGCATC ATCGTCAATC TGGAAGAGGA TTCGCTGGCC CGCAGCCATT TTGAACAGCA CGGCACCTCG GCCTGCGCCG TGGCGCTGGC CACGCCGGAT GTCGCCGGGG CGCTGGCGCG CGCCGAAGCC TTGCTGTGCC CGCGTGTGAA CGGGCGTGTG GGTCAGAACG AGCTGACCAT TCCCTCCGTG CGCGCACCCG ACGGCAGCCT GCTCTATTTT TGCGAAGCGC CGCAAGGTGG CCGCTACGCC TTTGAAGCCG ACTTTGTGAT GGACGAATCC GCCCTGCACG GCGGTGCACT GGGTGACAGG GCACGTTTCG ACCACCTGGT GCAGGCTGTG CCGGCCGGGC AGGTCGAGCC GTGGGTGCTG TTCCATCGTG CGGTGCTGGG CCTGGCGCCC GAGCGCAACG TCGTGATGCA TGACCCCTAC GGCGTGATCA GGAGCCGCGA GATTGAATCG ACCGACCGTG AAGTGCGCGT GTCCATCACT GTTTCCGAAC GCGACAACAC CTCGGTGTCC CGTGCCGTGT CGAGCTTTCG TGGCGCTGGC GTTCAGCAAA TTGCCATCGC AGTGACCGAC CTGGTGGCAA CGGCACGCGC ACTCAAGGCA TCGGGCGCGC CGCTGCTGCC CGTGCCGGCC AACTACTACG ACGACCTGCT CGCCAGGTAC GACATCGACG CCGGCTTGCT GGCGGCCATG CGCGAACTGG GCATCCTGTA CGACCGCGAA GCGGACGGTG GCGAGTTCCT GCATTTGTAC CTCACGCCGT TCGACGACCG TTTCCATTTT GAACTGGTCG AGCGACGCGC AGGCTACGCC GGCTATGGCG CGCCGAACGC CCCGTCGCGA CTGGCGGCCA TGGCGCAGTG GCGCCAGGCG CAGCAGTGA
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Protein sequence | MRHSIATVSL SGMLREKLQA AAAAHFDGVE IFENDLLQFP GTPAEVRRIC EDLGLRIDMF QPFRDFDGTT PAQVARSLER AERKFDVMQE LGTELILVCS NVQPDALGDV DQLAGQFHQL AERAGRRGMR IAYEALAWGS QVKLWSQAWS VVERVNHPHM GLALDSFHTL SLRDDPGGIA RLPGEKIFFV QLADAPWVNT DVLTHSRHYR CFPGQGEMEV TRFTAAVIES GYSGPLSLEI FNDEFRSAPA RANAVDARRS LLWLEDQVCQ SRAKDAPPCK APLFAPPPAP VLTGWAFVEF AVDPAAGGRL AAWLQATGFH RIGHHRSKKV DLYGQGEVRI IVNLEEDSLA RSHFEQHGTS ACAVALATPD VAGALARAEA LLCPRVNGRV GQNELTIPSV RAPDGSLLYF CEAPQGGRYA FEADFVMDES ALHGGALGDR ARFDHLVQAV PAGQVEPWVL FHRAVLGLAP ERNVVMHDPY GVIRSREIES TDREVRVSIT VSERDNTSVS RAVSSFRGAG VQQIAIAVTD LVATARALKA SGAPLLPVPA NYYDDLLARY DIDAGLLAAM RELGILYDRE ADGGEFLHLY LTPFDDRFHF ELVERRAGYA GYGAPNAPSR LAAMAQWRQA QQ
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