| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_1485 |
|---|
| Symbol | |
|---|
| ID | 4686988 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | - |
|---|
| Start bp | 1573501 |
|---|
| End bp | 1574499 |
|---|
| Gene Length | 999 bp |
|---|
| Protein Length | 332 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 639834488 |
|---|
| Product | D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding |
|---|
| Protein accession | YP_981720 |
|---|
| Protein GI | 121604391 |
|---|
| COG category | [C] Energy production and conversion
[H] Coenzyme transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG1052] Lactate dehydrogenase and related dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.675227 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCATTT CTTCCGACCG CAAAAAGGTG CTGGTGTTCA GGGAACTGCC GCCCGACCAG
CTGGCACGGC TGCAGGCGCG GCACGACGTG ACCGTCGCCA ATCCGCGCCT GCCGGAACAA
TTGCCTGCGT TTCAGGCAGC GCTGGCAACG GCCGAAGGAC TGATCGGCTC CAGCTACAAG
ATTGATGAAG CGCTGCTGGC CGCAGCGCCG CGATTGAAGG TGATTTCCAG CGTATCAGTC
GGCGTGGACA ACTACGCCCT GGACGCGCTG GCCGCGCGCG GCATCGTGCT GTGCCACACG
CCCGGCGTGC TGACCGAAAC CACCGCCGAC ACGATTTTTT CGCTCGTCAT GGCGACCAGC
CGGCGCCTGG TCGAGCTGGC CGGCCTGGTG CGCGAAGGCC GCTGGACGCG CAACATCGGC
GAAGAGCTGT TTGGCTGGGA CGTGCATGGC AAAACGCTGG GCATCCTCGG TTTTGGCCGC
ATCGGCCAGG CGGTGGCGCG GCGTGCCGCG CTGGGCTTTG GCATGCCGGT GCTCTACCAC
AGCCGCCGCC CGGTGGACCT GGCCAGGAAG GCGCCGGAAC TGGCGGGCAA GGCGCTGCAC
ACGCCGCTCG ATGAACTGTT GCGACATGCC GACATCGTCG CCGCCGTGCT GCCCCTGTCG
AATGAAACCC GGGGACTGAT GGGCGGGCGC GAGTTCGGCC TGATGAAGCC GGGCGCGATT
TTCATCAACG GCGGGCGCGG CGCCACCGTG CAGGAAGCAG CCTTGCTCGA CGCCCTCGAC
CACGGCACGC TGCGCGCCGC CGGGCTGGAC GTGTTCGCCA CCGAGCCGCT GCCGATGGAC
TCGCCCTTGC GCACCCATCC CAAGGTGACC GCGCTGCCGC ACATCGGCTC GGCCACTGTT
GAAACCCGCT ATGCGATGGC GGTGCTGGCC ACGACCAATT TGCTGCAGGC GCTGGCGGGC
GAACGGCCCA CGGCGGTGTT TGAAATGACG GCGGGCTGA
|
|---|
| Protein sequence | MTISSDRKKV LVFRELPPDQ LARLQARHDV TVANPRLPEQ LPAFQAALAT AEGLIGSSYK
IDEALLAAAP RLKVISSVSV GVDNYALDAL AARGIVLCHT PGVLTETTAD TIFSLVMATS
RRLVELAGLV REGRWTRNIG EELFGWDVHG KTLGILGFGR IGQAVARRAA LGFGMPVLYH
SRRPVDLARK APELAGKALH TPLDELLRHA DIVAAVLPLS NETRGLMGGR EFGLMKPGAI
FINGGRGATV QEAALLDALD HGTLRAAGLD VFATEPLPMD SPLRTHPKVT ALPHIGSATV
ETRYAMAVLA TTNLLQALAG ERPTAVFEMT AG
|
|---|
| |