| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_1298 |
|---|
| Symbol | |
|---|
| ID | 4686637 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | + |
|---|
| Start bp | 1386789 |
|---|
| End bp | 1387550 |
|---|
| Gene Length | 762 bp |
|---|
| Protein Length | 253 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 639834301 |
|---|
| Product | secretion protein HlyD |
|---|
| Protein accession | YP_981534 |
|---|
| Protein GI | 121604205 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAACGGAC AGAGCGAAGC GGACGCCAAC CTGCGCGGCG CGCGGGCGGC CCTGCAGACG
GCGCGCCTGA GCCTGGATTA CACGCAGGTG CGCGCGCCGG TGGCCGGGCG GGTCGGCAGG
CTCGAAGTGA CCATCGGCAA CCTGGTCGCC GCCGGACCGG GCGCGCCGGT GCTGACCACG
CTGGTGTCGG TCAGCCCGAT CTACGCCAGT TTCGACGCCG ACGAGCAGGC CGTGGCCAAG
GCCCTGAAGG ACGCCGGCGG CGGCACTGCG GGCGCGCGCA ACCTGGAGCG GATTCCCGTG
CGGATGGGAA CGGCCGCCAG CGCCGACACG CCGTTCGAGG GCAAGCTGCA ACTGGTCGAT
AACCAGGTCG ATGCCAAGAG CGGCACGGTG CGCGCCCGCG CCGTGTTCGA CAACCCGGAC
GGCCAGCTGA TGCCCGGCCA GTTTGCCCGC ATCCGCATGG GCCAGGCGAC GGCGGCCAAG
GCCTTGCTGG TCAACGAGCG CGCCGTCGGC ACCGACCAGA ACAAGAAATT CGTCATGGTG
GTGGGCGCTG ACAACAAGGC GCAATACCGC GAAGTCACGC TGGGCGCGGC CGTCGAGGGC
CTGCGCGTCG TGAAAACCGG CTTGCAGGCC AATGAACGCA TCGTGGTCAA TGGCTTGCAG
CGCATCCGTC CCGGCGCGCT GGTCGCTCCG CAGACCGTGG ACATGTCGGC CAAGGCCGAA
CTGGCCAAGC CGGCCGTCGT GGCCGAAGCC GCCAAATCCT GA
|
|---|
| Protein sequence | MNGQSEADAN LRGARAALQT ARLSLDYTQV RAPVAGRVGR LEVTIGNLVA AGPGAPVLTT
LVSVSPIYAS FDADEQAVAK ALKDAGGGTA GARNLERIPV RMGTAASADT PFEGKLQLVD
NQVDAKSGTV RARAVFDNPD GQLMPGQFAR IRMGQATAAK ALLVNERAVG TDQNKKFVMV
VGADNKAQYR EVTLGAAVEG LRVVKTGLQA NERIVVNGLQ RIRPGALVAP QTVDMSAKAE
LAKPAVVAEA AKS
|
|---|
| |