| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_1241 |
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| Symbol | |
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| ID | 4688255 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas naphthalenivorans CJ2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008781 |
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| Strand | - |
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| Start bp | 1332170 |
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| End bp | 1332952 |
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| Gene Length | 783 bp |
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| Protein Length | 260 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 639834244 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_981477 |
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| Protein GI | 121604148 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0407787 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.415093 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCAATA AATCATCAAC AATTTCCTTC GGACTGGCGG GTCGGGTGTG CATCGTCACC
GGCGGCGCGC AAGGCATTGG CGAGGCGTGC ATCCGCCGCT TTGCCCGCGA AGGCGCTCAG
GTCGTGGTTG CCGATATCGA CGACGCTCGC GGCGCCGCGC TGGCGGGCGA ACTGGGCGGC
TTGTATGTGC ACTGCGATGT CGGCGACAAG GCGCAGGTGG ATGCGCTGGT GGCGCAAGCC
ATGGCGGCGC ATGGCCGCAT CGACGTGCTG GTCAACAACG CCGGGATTTT CAAGGCAGCC
GATTTCCTGG AGGTCACCGA GGCCGACTTC GATGCCGTGC TGCGCATCAA CCTCAAGGGC
TCGTTCCTCG TCGGCCAGGC GGTGGCGCGT GAAATGGCCA AGGCGGGCCA AGGCAGCATT
GTCAACATGA GTTCGGTCAA CGCCGTGCTG GCGATTCCCA CGATTGCCAG CTACAACGTC
AGCAAGGGCG GCATCAACCA GCTGACGCGG GTCATGGCGC TGGCCCTGGC CGACAAGGGC
ATACGCGTCA ACGCCGTGGC GCCCGGCACC ATCGCCACCG AACTGGCCGC CAAGGCGGTG
CTGACCAGCG AGGAAGCCAA GGCCAGGATC ATGAGCCGCA CGCCCATGAA GCGCCTGGGC
GAGCCGTCGG AGATTGCCGA CACCGTGGCC TACCTGGCCA GCGACGCGGC GAGCTACATC
ACCGGCGAGA TCGTGGTGGC CGATGGCGGG CGCATGACGC TGAACTACAC GGTTGCGCTC
TAG
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| Protein sequence | MSNKSSTISF GLAGRVCIVT GGAQGIGEAC IRRFAREGAQ VVVADIDDAR GAALAGELGG
LYVHCDVGDK AQVDALVAQA MAAHGRIDVL VNNAGIFKAA DFLEVTEADF DAVLRINLKG
SFLVGQAVAR EMAKAGQGSI VNMSSVNAVL AIPTIASYNV SKGGINQLTR VMALALADKG
IRVNAVAPGT IATELAAKAV LTSEEAKARI MSRTPMKRLG EPSEIADTVA YLASDAASYI
TGEIVVADGG RMTLNYTVAL
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