| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_1166 |
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| Symbol | |
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| ID | 4689260 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas naphthalenivorans CJ2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008781 |
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| Strand | - |
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| Start bp | 1241752 |
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| End bp | 1243779 |
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| Gene Length | 2028 bp |
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| Protein Length | 675 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 639834170 |
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| Product | Fis family GAF modulated sigma54 specific transcriptional regulator |
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| Protein accession | YP_981403 |
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| Protein GI | 121604074 |
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| COG category | [K] Transcription
[Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG3284] Transcriptional activator of acetoin/glycerol metabolism |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.321857 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCAATCA GCATCTCAAA GCAAATGTTT TCATTGCCAG AAAACGATGG CCGCATCATG
TCCGTGTGGG AAGATTTCCT GAACGGGACC GAAACGAATT CGAGCGCTCT GCGGCATCTG
ATCGACGAGT CATGGCGGCG ATGCCAGCAC GCCAGCGTGG ATCCCAACCG CGCCCAGGCG
CCAGTACCAA TGGCAGGGCA ATCGCTGCAC ACACTGCTGG ACTATTGCGC GGAATTGCTT
GATGTGAGTG CGCCAGTGAT GGCGCTGGCG CGGGATTTCC TGGCGGAGAC GGGTACGGTC
ATGGTCCTCA CAGATCCGCG AGGGACTGTT TTAAACATGG AAGGTGATTC CACGACCCTG
GATGCCGCTG AAAATTTGCA TTTGATCACC GGGGCCGACT GGAGCGAGTC GTCTTGTGGC
ACGAATGCGA TTGGAACCAC TTTGGCAATC GGCCAGCCAG TTCAGATCCA TTCAGCTGAA
CATTACTGCG AAGGCATCAA ACGATGGTCG TGTTCTGCCA CGGTCATCCG TGATCCTCTG
GATGGCAGAA CGCTAGGCGC GCTTGACGTG TCAGGATTGA ATGATTCCTA TGGTCGCCAC
AACCTGGCTT TGGTGGTGTC CACGGCGGCT CGCATTGAAA GCCAGCTGGC CAAGTCGGAA
CTCGATATCC GCTACAGCTT GCTGGAGGCT TGTGTCGGCC GTATTTCTGA CAATTCTGGA
GATGGCGTCA TCCTGTTCGA CCGTCGAGGC CGGGCGATCA AGGCCAATGG AAAGGCGACA
CTGATGCTGG GCGAACTGGA AGGACTGCAT GGCAGCTCGT CGAGCGCGCG ACTGGCCGAA
ATCAGGATCG GAAATGACCT CGCGTCCGCT CAGCTCCCCG CCTGGGCGAA AGAAGAATTC
CTGGAGCCGG TCATGCTCAA CGGGCGGCAA GTCGGCACCT TGTTGACCTT GCCCAATCGC
CGTCAACGCT CCAATGGCAC AAGCTGGTCC ATTCCTGTTC CCATTGCCGC CCCCGCCGAT
AAATCCTTCG AGCGCATCAT CGGCCAGTCC GAAGTCATCA AGCAGACCAT TTTCCGCGCC
CGGCAACTGG CCAAATCGCG GGTGCCCGTA CTTCTATCTG GCGAAACCGG GGTGGGCAAA
GAAGTGTTCG CGCGCGGAAT CCATGAAGCC AACGCCGACA AAAATGCACC GTTCATCGCA
TTGAACTGTG GCGGCTTCTC GCGCGAATTG CTGACGAGCG AGCTGTTCGG TCACGTCGAA
GGCTCGTTTA CCGGCGCCAA GCGAGGCGGG ATGACAGGCA AGATCGAAGC GGCCAATGGC
GGAACCCTCT TTCTGGACGA AATAGGTGAG ATGCCGATGG ACCTTCAACC CTATTTTCTA
CGCGTGCTTG AGGAGGGGGA AGTTCATCGA CTGGGTGAAA CCCGGCCGCG CAAAGTGAAT
TTTCGCCTGA TCGCAGCAAC CCACCGTGAT TTGAGAAAGG AAATACGCAA TGGCAATTTC
CGCATGGACC TTTTCTATCG CGTCTCGGTC ACCAGTGTGA ATATCCCTTC GCTTCGGGAG
CGGGCCGAGG ACATTCCTCT GCTGGCTGAG CACTACCTGA AACTGCTGTC CCGCCAGCAC
GGCATTGAAA ATGTGACGAT GTCAGCGGGT GTCATCAAGC GATTGATGAA TTACGAGTGG
CCGGGCAATA TTCGCGAGTT GAAAAACGCG GTGGAAAGCA TGCTGCTGAC CAGCCAACAC
AGCGTGATCT CCGAGTTTGA TCTTTCGCCC GAAATTCTTG GCCATGGAGC CGAGAATACG
TTTTCGCCTG GAGACGATGG GCCGCATGGC AACGATTTCA CACGCTTCAA GCAGGCCGAG
CGCACTGCCC TGCTGAACGC CATCCGGCAA TGCAATGGAA ACGTGTCGGC AGTGGCCCGC
AATCTGGGAA TCGCAAAGAG CACGGTTTAC CTCATGCTGA AGAGATTCGA CCTTGAAGGC
CTGGTAAGCG CATCACGGCA CAGCACCGCG CCCTACACGC CGCTCTGA
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| Protein sequence | MPISISKQMF SLPENDGRIM SVWEDFLNGT ETNSSALRHL IDESWRRCQH ASVDPNRAQA
PVPMAGQSLH TLLDYCAELL DVSAPVMALA RDFLAETGTV MVLTDPRGTV LNMEGDSTTL
DAAENLHLIT GADWSESSCG TNAIGTTLAI GQPVQIHSAE HYCEGIKRWS CSATVIRDPL
DGRTLGALDV SGLNDSYGRH NLALVVSTAA RIESQLAKSE LDIRYSLLEA CVGRISDNSG
DGVILFDRRG RAIKANGKAT LMLGELEGLH GSSSSARLAE IRIGNDLASA QLPAWAKEEF
LEPVMLNGRQ VGTLLTLPNR RQRSNGTSWS IPVPIAAPAD KSFERIIGQS EVIKQTIFRA
RQLAKSRVPV LLSGETGVGK EVFARGIHEA NADKNAPFIA LNCGGFSREL LTSELFGHVE
GSFTGAKRGG MTGKIEAANG GTLFLDEIGE MPMDLQPYFL RVLEEGEVHR LGETRPRKVN
FRLIAATHRD LRKEIRNGNF RMDLFYRVSV TSVNIPSLRE RAEDIPLLAE HYLKLLSRQH
GIENVTMSAG VIKRLMNYEW PGNIRELKNA VESMLLTSQH SVISEFDLSP EILGHGAENT
FSPGDDGPHG NDFTRFKQAE RTALLNAIRQ CNGNVSAVAR NLGIAKSTVY LMLKRFDLEG
LVSASRHSTA PYTPL
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