| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_0907 |
|---|
| Symbol | |
|---|
| ID | 4689432 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | - |
|---|
| Start bp | 959468 |
|---|
| End bp | 961117 |
|---|
| Gene Length | 1650 bp |
|---|
| Protein Length | 549 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 639833904 |
|---|
| Product | DNA repair protein RecN |
|---|
| Protein accession | YP_981145 |
|---|
| Protein GI | 121603816 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0497] ATPase involved in DNA repair |
|---|
| TIGRFAM ID | [TIGR00634] DNA repair protein RecN |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.933799 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.849345 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCTTA AAAGCATTGC CCTGCGCGAC TTCGTGATCG TCCGCGAAAT GGACCTGGAC
TTGTCGCAAG GATTCACGGT GCTCACCGGC GAAACCGGCG CCGGCAAATC CATATTGATT
GGCGCCCTGC AACTGGTTCT GGGCGCACGC TCCGACGCAG GCGTGGTGCG CGAAGGCGCC
GGGCGCTGCG AGATCAGCGC GGAATTCGAC AATGCTGCCC GCCTCGCGCC CTGGCTGGAA
CAGGCTGGCC TTGAATCGGG CGAAACCCTG TTGCTGCGCC GCACGATTGA TGCGCAGGGC
AAGAGCCGGG CCTGGATCAA CGGCAGCGCG GTAACGGCCA CCCAGCTCAG GGACATCGCC
AGCCAGTTGG TCGATATTCA TGGCCAGCAT GCCTGGCAAA GCCTGACGCG TCCTGAAGCC
GTTCGTGGCC TGCTGGACGC CTATGCAAAT GTCTCCACCG AGACGCTGTC CCTGCGCTGG
CAGGAGTGGC GCCTGGCCCA GAAAACCCTG TCCCAGGCGC AAGGTGCCCA GGACAGCCTG
CAGCGCGACC GTGAACGGCT GGCATGGCAA ATCGGCGAGC TGGGCAAGCT GGCGCCTGGC
ACCCATGAAT GGGAAGAACT CAATGCCCAG CATGGTCGCC TGTCCAATAT CCAGGCTTTG
CGCGAGGCCG TGCAAACCGC GGTCGATGCC TTGCAGGAAG CCGATGACAA TGCCACTAGC
CTGCTCGGCC GCGCCATTAA CGCACTACAA AATCAGGAGC ACATCGAGCC CGAATTCAAA
GCGCTGACAG AGCTTTTGAA CACGGCACTG GCACAAATGG AGGATACCGT GCATACCTTG
CGCGGTTATG CCAGGCATGC CGAACTGGAG CCGCAGCGGC TGGCCGAACT CGACGAGCGT
CTGGCCCAAT GGGTTGGCCT GGCGCGCCGC TACAAGCGTC CGCCGGCCGA GCTGCCTGAA
TTGCTGGCCT CCTGGCAGTC CGAGTTGCAA GCGCTCGATG AAGCGGCGGA CCTGGTCCAG
CTTGAAAAAA AGGAGTCCCA GGCCAAGGCG GCCTATCTGA AAGAGGCCAG CCGGATTTCC
GGCTTGCGCA GCCAGTCCGC ACCCCTGCTT GCCACAGCCA TTACCCAAGC CATGCAGGGC
CTGGGCATGC AGGGCGGCAG GTTTGAGGTC GTCCTCACGC CGCTGGAGCA GCCAGCCCAG
CATGGGCTTG AACAGGCTGA ATTTATGGTT GCCGGCCACA GCGGCAGCAC GCCCAGGCCG
GTGGCCAAGG TGGCCTCAGG CGGCGAGCTG TCCCGCATTG CGCTGGCCAT TGCCGTGACC
ACCAGCCAGT TGGGGCAGGC GCAAACCCTG ATTTTTGACG AGGTGGATTC CGGCGTGGGC
GGCGCCGTGG CTGAAACTGT CGGCCGGCTG ATGCGGCAAC TGGGCCAGGA CCGGCAGGTC
ATGGCGGTGA CGCATTTACC CCAGGTCGCC GCTTTTGCCG ACCATCATCT CGTGGTTGCC
AAACGAACGC AACGGGGCAC TGCCTTGAGC ACCGTGACCC AGATGGACGG TGAGCAGCGC
GTGACCGAAA TTGCCCGCAT GCTGGGTGGC GAGCGGCTTT CCGGCGCCAC GCTTGCGCAT
GCCAGGGAAA TGCTGGCTCA CGCTGGATAA
|
|---|
| Protein sequence | MSLKSIALRD FVIVREMDLD LSQGFTVLTG ETGAGKSILI GALQLVLGAR SDAGVVREGA
GRCEISAEFD NAARLAPWLE QAGLESGETL LLRRTIDAQG KSRAWINGSA VTATQLRDIA
SQLVDIHGQH AWQSLTRPEA VRGLLDAYAN VSTETLSLRW QEWRLAQKTL SQAQGAQDSL
QRDRERLAWQ IGELGKLAPG THEWEELNAQ HGRLSNIQAL REAVQTAVDA LQEADDNATS
LLGRAINALQ NQEHIEPEFK ALTELLNTAL AQMEDTVHTL RGYARHAELE PQRLAELDER
LAQWVGLARR YKRPPAELPE LLASWQSELQ ALDEAADLVQ LEKKESQAKA AYLKEASRIS
GLRSQSAPLL ATAITQAMQG LGMQGGRFEV VLTPLEQPAQ HGLEQAEFMV AGHSGSTPRP
VAKVASGGEL SRIALAIAVT TSQLGQAQTL IFDEVDSGVG GAVAETVGRL MRQLGQDRQV
MAVTHLPQVA AFADHHLVVA KRTQRGTALS TVTQMDGEQR VTEIARMLGG ERLSGATLAH
AREMLAHAG
|
|---|
| |