Gene Pnap_0809 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnap_0809 
Symbol 
ID4686055 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolaromonas naphthalenivorans CJ2 
KingdomBacteria 
Replicon accessionNC_008781 
Strand
Start bp852358 
End bp854595 
Gene Length2238 bp 
Protein Length745 aa 
Translation table11 
GC content59% 
IMG OID639833806 
Product(p)ppGpp synthetase I, SpoT/RelA 
Protein accessionYP_981049 
Protein GI121603720 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG0317] Guanosine polyphosphate pyrophosphohydrolases/synthetases 
TIGRFAM ID[TIGR00691] (p)ppGpp synthetase, RelA/SpoT family 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCGACGT CCGTCGTTCC CCGCAAGCCA ACACCCGCCG CAGCCAACGC TGCGGCGGCC 
AGTTTTGCCG CGTTGACCGC CAAACTCGAC TACCTGAGTG CTGCAGACAT TGAACATGTC
CGCCAGGCCT ACCGCTTCGC CGATCAGGCC CATCTGGGAC AACTGAGAAA CAGTGGCGAG
CCCTATATCA CCCATCCCAT CGCAGTGGCC CAGCAGTGCG CCGAATGGAA ACTCGATGCC
CAGGCCCTGA TGGCGGCGCT GCTGCACGAT GCCATTGAAG ACTGCGCAGT CACCAAGCCG
GAACTGATCG AGCGCTTTGG CGCACCCGTG GCTGAGCTGG TGGATGGCCT GACCAAGCTG
GAAAAGCTGG AGTTCAACAC CCGCGAAGAA AATCAGGCGG AGTCCTTCCG CAAGATGCTG
CTGGCCATGG CGCGCGACGT TCGCGTCATT CTGATCAAGC TGGCGGACCG CATGCACAAC
ATGCGAACGC TGAGCGATGC GCCGCGCTCC AAATGGAAAA GAATCGCCAG TGAAACGCTG
GATATTTACG CGCCGATTGC GCACCGCCTG GGCCTGAACT CGACCTATCG CGAGTTGCAG
GACCGATCAT TTCAGCACCT GCATCCGTGG CGCTATGCCA TCCTGACCAA AGCCCTGACA
CGGGCGCGGG GCCGCCGGCG TGACGTCATC AAACGCGTGC AATCCGAAGT CGAGGCAGCC
TTTGCCAGCG CACAGATTGC GGTTCGGGTC TATGGACGCG AGAAAACGCT GTACTCGATT
TACCACAAGA TGGACCAGAA GCATTTTTCT TTTGCACAGG TCACTGATCT TTACGGTTTT
CGGGTGATCT TGCCGGACGT GACGGCCTGC TACAGCGCCA TGGGCATCCT GCATCAGCTC
TACAAGCCCT TGCCGGGCAA GTTCAAGGAC TACATCGCCA TTCCCAAGGT CAACGGCTAC
CAGTCGCTGC ACACCACGCT GGTCGGGCCT TTCGGAACCA ACATCGAATT CCAGATGCGT
ACCGATGCCA TGCATGTCGT GGCAGAGGCG GGCGTGGCGG CCCACTGGCT GTACAAGGCG
TCTGATCCGA ACAGCGACAC CTCGCAGCGG CTGGGAACCA AATGGCTGCA GTCATTGCTC
GATATCCAGC AGGAAACCCA TGATGCCGCC GAGTTTTGGG ATCATGTCAA GATTGACCTG
TTTCCAGAAG CGGTTTACGT CTTCACCCCC AAAAGCCAGA TCATGGCGAT GCCGCGTGGC
GCCACCATCG TGGACTTCGC CTACGCCATT CACAGCGATG TGGGCCACCA TGCGATTGCG
GCCAAGGTCA ATGGCGAACA GGTCACGCTG CGTACCGAAC TGCTCAACGG CGATGTCATA
GAAGTCATCA CCTCTCCCGT TTCCACGCCC AATCCGGCCT GGCTGGGATT CGTTCGAACC
GGCAAGGCTC GCTCGAAGAT CCGGCACTAT CTCAAGAGCA TGGCGCTCAC GGAATCGCAA
GAACTGGGTG AAAAAATGCT GGCTCAGGCA TTGCGGGCCG AAGGCATAGA CCGGCAACGC
CTTTCAGCGG ATGATGGAGC GCATCACGCC AAGTGGGAAA AAATCCTGCG TTTTACGGGC
AACCGTTCAC GCGCCGAATT GCTGACCGAC ATTGGCATGG GCAAGCGCAT CGCCAGCATG
ATTGCCAAAC GCATTGTGAC TTTTCTCGCT GAAGATGGTG AAAAACCCGA TGCCTTGCTG
ATGAGCCGGG AACGCTACAT TCCACACGAG TCAGTCTCGC AAGGTGGCCT GGTGCTCGAT
GGCAGCGAAG GCGGTTCAGT CCAGTTTGCG CGATGCTGCT GCCCGATTCC CGGTGATGGA
ATCGTGGGCT ATCTGGGGCG GGGCGAAGGG CTTTTTGTCC ATACCGACGA CTGTGCCGTG
GCCAAGCGCC TGCAGCAACG CGACAGCGAA CGGTTCATCG CCGTTGATTG GTCGGATGAA
CCCGCCCGCA CCTTTGAAAC CAATCTTCTG GTGACGGTTT CGAATGGTAA AGGGGTACTG
GCAAAAGTGG CAACGGCCCT TGCCGGTGCT GAAGTTGACA TTACCCATGT GGACATGGGG
CATGAGCCTG CGAACGGTGC AACCGACCTG CGATTTACCG TGGCTGTACG CGACCGTATT
CACCTGGCTG CAGCGATGCG CAATGTCAGG CGCACGCAAG CGGTGCTTCG GGTTCAACGG
GTCAAGGCAA GCGCTTGA
 
Protein sequence
MPTSVVPRKP TPAAANAAAA SFAALTAKLD YLSAADIEHV RQAYRFADQA HLGQLRNSGE 
PYITHPIAVA QQCAEWKLDA QALMAALLHD AIEDCAVTKP ELIERFGAPV AELVDGLTKL
EKLEFNTREE NQAESFRKML LAMARDVRVI LIKLADRMHN MRTLSDAPRS KWKRIASETL
DIYAPIAHRL GLNSTYRELQ DRSFQHLHPW RYAILTKALT RARGRRRDVI KRVQSEVEAA
FASAQIAVRV YGREKTLYSI YHKMDQKHFS FAQVTDLYGF RVILPDVTAC YSAMGILHQL
YKPLPGKFKD YIAIPKVNGY QSLHTTLVGP FGTNIEFQMR TDAMHVVAEA GVAAHWLYKA
SDPNSDTSQR LGTKWLQSLL DIQQETHDAA EFWDHVKIDL FPEAVYVFTP KSQIMAMPRG
ATIVDFAYAI HSDVGHHAIA AKVNGEQVTL RTELLNGDVI EVITSPVSTP NPAWLGFVRT
GKARSKIRHY LKSMALTESQ ELGEKMLAQA LRAEGIDRQR LSADDGAHHA KWEKILRFTG
NRSRAELLTD IGMGKRIASM IAKRIVTFLA EDGEKPDALL MSRERYIPHE SVSQGGLVLD
GSEGGSVQFA RCCCPIPGDG IVGYLGRGEG LFVHTDDCAV AKRLQQRDSE RFIAVDWSDE
PARTFETNLL VTVSNGKGVL AKVATALAGA EVDITHVDMG HEPANGATDL RFTVAVRDRI
HLAAAMRNVR RTQAVLRVQR VKASA