| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_0790 |
|---|
| Symbol | |
|---|
| ID | 4687442 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | + |
|---|
| Start bp | 833114 |
|---|
| End bp | 833758 |
|---|
| Gene Length | 645 bp |
|---|
| Protein Length | 214 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 639833786 |
|---|
| Product | two component LuxR family transcriptional regulator |
|---|
| Protein accession | YP_981030 |
|---|
| Protein GI | 121603701 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.870503 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.997505 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCAGGA TCGTGATCGC GGACGACCAT GCCATCGTCA GGGAAGGGCT CAAGCGCATT
GTCACTTTGG CGGAGGACAT GACGGTGGTG GGAGAAGCTG CAAACGGAAC AGAAGTCATG
CAGCAGGTGC GTGAATCAGA TTTTGATGTT CTGGTGCTTG ATCTGTCCAT GCCAGGGCGC
AGTGGCATGG AGTTGATCAA GATGGTGCGA TGCGAAAAAC CCAGGCTTCG CATCCTTGTG
CTCAGCATGC ATGAAGAACT CCAATACGCC GTTCGCTCGA TCAAGTGCGG TGCCAGCGGC
TACCTGACCA AGGAAAGCGC GCCGATGCAG CTGATGCAGG TGTTGCGCAA GATTGCTGCG
GGGGGCGCTT TCATCAGCAC TGGCGTTGCC GAACAGTTGG CTCTGGGCTC GATGCTGGGT
TCAAGCGCCG CAGCGCACGA AAAACTGACG GACCGGGAAT TCGAGGTCTT CCGTTTGATC
GCCATAGGCA TGTCCGTCAC GGATATTGCA GGGCGGCTGA ATCTTTCGGC CAAAACCATC
AGCACCCACA AAGCCAACCT CATGCAGAAA ATGAACCTGC AAAACCAGAG TGAACTGATT
CGCTATGCCA TCAAGCATGG CGTTACCGAA CCTCTGGAGC CGTAA
|
|---|
| Protein sequence | MIRIVIADDH AIVREGLKRI VTLAEDMTVV GEAANGTEVM QQVRESDFDV LVLDLSMPGR
SGMELIKMVR CEKPRLRILV LSMHEELQYA VRSIKCGASG YLTKESAPMQ LMQVLRKIAA
GGAFISTGVA EQLALGSMLG SSAAAHEKLT DREFEVFRLI AIGMSVTDIA GRLNLSAKTI
STHKANLMQK MNLQNQSELI RYAIKHGVTE PLEP
|
|---|
| |