Gene Pnap_0342 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnap_0342 
SymbolrpsM 
ID4688612 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolaromonas naphthalenivorans CJ2 
KingdomBacteria 
Replicon accessionNC_008781 
Strand
Start bp340050 
End bp340415 
Gene Length366 bp 
Protein Length121 aa 
Translation table11 
GC content55% 
IMG OID639833334 
Product30S ribosomal protein S13 
Protein accessionYP_980586 
Protein GI121603257 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0099] Ribosomal protein S13 
TIGRFAM ID[TIGR03631] 30S ribosomal protein S13 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.158727 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00039866 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGCACGTA TCGCTGGTAT CAACATTCCG CCGCAGAAGC ACGCCGAAAT CGGCTTGACT 
GCAATTTTTG GCATTGGTCG CACACGCGCT CGCAAAATTT GCGAAGCCTG TGAAATCGAC
TATGCCAAGA AAATCAAAGA TCTGACCGAC AGTGACCTGG AAAAAATCCG GGACCACATC
GCTCAGTTCA CCATCGAAGG CGATTTGCGT CGTGAAACCA CGATGAACAT CAAACGCCTG
ATGGACATCG GCTGCTACCG TGGCTTCCGC CATCGTCGTG GCTTGCCCAT GCGTGGCCAA
CGCACCCGGA CGAACGCCCG TACCCGCAAG GGTCCGCGTA AGGCCGCTGC GTCTTTGAAG
AAATAA
 
Protein sequence
MARIAGINIP PQKHAEIGLT AIFGIGRTRA RKICEACEID YAKKIKDLTD SDLEKIRDHI 
AQFTIEGDLR RETTMNIKRL MDIGCYRGFR HRRGLPMRGQ RTRTNARTRK GPRKAAASLK
K